📣 We're pleased to announce the reintroduction of the taxonomy restriction feature.
Sequence searches can now be restricted to specific taxonomic groups, allowing more control over which species are included in the results.
#bioinformatics #hmmer #proteins

📣 We’re pleased to announce the release of jackhmmer.
It’s now available for use, and we’d greatly value any feedback as we continue to improve the tool.

www.ebi.ac.uk/Tools/hmmer/...
Give it a try and share your thoughts!

#bioinformatics #hmmer

Thanks! We're actively working on bringing back the jackhmmer functionality. We'll definitely post an update here announcing it which should happen in the following months.

📣 We will be transitioning to a new website architecture on May 20, 2025.
We will not be running a parallel system, so you may have to make a few changes, especially if you are using the API.

Service will be interrupted tomorrow, Thursday 29th, 0700 - 1100 BST owing to planned infrastructure changes.

search services will be effected by this. https://x.com/emblebi/status/1091670896337698816

The August release of @hmm3r is out!
It now includes @ChEMBL as a searchable sequence database 🔎
Try it now at www.ebi.ac.uk/Tools/hmmer/search/phmme...

Try the latest version of @hmm3r with the brand new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search
https://x.com/uniprot/status/1019592114932416512

Ever had too much data in your taxonomy tree?🌳 Try the new fisheye mode in the latest release of @hmm3r (“taxonomy” tab in your results) here https://www.ebi.ac.uk/Tools/hmmer/search/phmmer This visualisation uses this library github.com/ProteinsWebTeam/taxonomy...

Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/1010190457895374849

🚨 @hmm3r website availability at risk on Saturday 9th June 🚨
Due to important system maintenance at the @emblebi, the Hmmer Website might become unavailable for some time tomorrow afternoon (UK time). 🚧
Sorry for the inconvenience.

website now makes available @ensembl release 92 and @ensemblgenomes release 39. Try searching these databases now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/999322111020814337

Are you experimenting with @BioSchemas? Have a look at the @hmm3r website. Pages are now annotated with structured data and result pages include current version of @BioSchemas annotations for protein, structures, and protein annotations.
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

📢 With our newest release, you can now search the TreeFam database. Try it here https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan and select the “TreeFam” option. http://www.treefam.org/

You can try the latest version of @hmm3r with the new @uniprot data.
Give it a go at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/991241316561489921

The latest version of the @hmm3r website now contains the latest release of @ensemblgenomes, version 38. Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

This data release is already included in the new release of the @hmm3r website. Search @uniprot release 2018_01 at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer https://x.com/uniprot/status/958736502808285184

📢 New version of the @hmm3r website available with MEROPS database version 12.
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

📢 New version of the @hmm3r website available with the new 2017_11 release from @uniprot (see https://x.com/uniprot/status/933374715615379456 …)
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

📢 New version of the @hmm3r website available with @CATHDatabase Gene3D version 16.0
Try it now at www.ebi.ac.uk/Tools/hmmer/search/hmmsc...

📢 New version of @hmm3r website available with the brand new 2017_10 release from @uniprot. Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

And the data is already available in the new version of the @hmm3r website! Search the latest @uniprot data now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer https://x.com/uniprot/status/913704907303243776

🔐 Remember that the switch is happening today, during the next hours. If your script starts failing please check the URL you are using. https://x.com/hmm3r/status/910134236434305027

📢 The new version of the @hmm3r website is out. It now includes @ensembl 90 and @ensemblgenomes 37. Try it at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

Some servers stopped overnight, causing searches to be unavailable this morning. Everything should be back to normal now, sorry about that.

In jackhmmer searches you now have the “unselect all” option for easier sequence selection across iterations. Try it https://www.ebi.ac.uk/Tools/hmmer/search/jackhmmer

Try the @hmm3r website here https://www.ebi.ac.uk/Tools/hmmer/search/phmmer …. The latest version includes @ensembl release 89 and @ensemblgenomes release 36.

New @uniprot release, and the data is already available to search from in our latest @hmm3r release. give it a go at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer https://x.com/uniprot/status/882621769001185280

Give the new version of @hmm3r a go at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer Now with the latest @uniprot June 2017 release