Advertisement ยท 728 ร— 90

Posts by Marco D'Agostino

Post image

Happy to share my first paper ! ๐Ÿš€
Thanks to the PEPA lab and my great coauthors @adrienheymans.bsky.social, Rรฉmy Schoppach, Valentin Couvreur and @guillaumelobet.bsky.social !

"Secondary Growth and Exodermal Barriers Shape Local Root Hydraulics: Modeling Insights"
doi.org/10.64898/2026.01.27.701735

1 month ago 4 1 0 0

Decreased root hydraulic traits in German winter wheat cultivars over 100 years of breeding (Juan C Baca Cabrera , Jan Vanderborght , Yann Boursiac , et al) doi.org/10.1093/plph... #PlantScience @agrosphere-ibg-3.bsky.social,@guillaumelobet.bsky.social

9 months ago 9 4 0 1
Post image Post image

It was an incredible opportunity to present my work at #rhizosphere6 !

"Modeling water uptake : influence of secondary growth, hydrophobic barriers and developmental anatomy on root hydraulic properties"

We couple functional models with experiments to better understand plant water uptake ๐Ÿชด

9 months ago 5 0 0 0
Post image

๐Ÿ’ป Simulating rhizodeposition patterns around growing and exuding root systems
doi.org/10.1093/insi... #roots #model #PlantScience

9 months ago 10 5 0 0

So happy to be in that an amazing lab ๐Ÿ˜€

10 months ago 3 0 0 0
FEM and TEM reveal the process by which cell separation may initiate in the outer epidermal edge filling (OEEF) and propagate to the supracellular outer epidermal wall FEM and TEM reveal the process by which cell separation may initiate in the outer epidermal edge filling (OEEF) and propagate to the supracellular outer epidermal wall (SOEW).
CC-BY-NC-ND 4.0 International license.
(which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is
bioRxiv preprint doi: https://doi.org/10.1101/2025.04.03.646819; this version posted April 6, 2025.

FEM and TEM reveal the process by which cell separation may initiate in the outer epidermal edge filling (OEEF) and propagate to the supracellular outer epidermal wall FEM and TEM reveal the process by which cell separation may initiate in the outer epidermal edge filling (OEEF) and propagate to the supracellular outer epidermal wall (SOEW). CC-BY-NC-ND 4.0 International license. (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is bioRxiv preprint doi: https://doi.org/10.1101/2025.04.03.646819; this version posted April 6, 2025.

New preprint from @stephanevrg.bsky.social 's lab!

๐Ÿงช Simulations + mutant tests show a shift in how we think about plant cell adhesion, challenging "textbook" view on the role of middle lamella.

๐Ÿ“„ doi.org/10.1101/2025...

Thank you ร–zer Erguvan and all co-authors ๐Ÿ”ฌ

#PlantSci #CellBiology

1 year ago 18 10 0 0
Modeling Water Fluxes in the Soil Plant System โ€” ISMC The 2nd International Summer school Advanced Soil Physics: Soil-Plant-Water Flow

๐Ÿ“ฃ Summer School: #Modeling Water Fluxes in the #Soil Plant System

UCLouvain, Belgium | 8 -12 September 2025

soil-modeling.org/activities/s...
#PlantScience

1 year ago 6 6 1 1

Great project with great opportunities, lead by a great supervisor in a great lab ๐Ÿ˜

1 year ago 3 0 0 0
Preview
Harnessing the Power of Synthetic Data for Deep Learning Image Analysis The Synavis framework provides a solution to overcome data scarcity for training deep learning biological image analysis models.

๐Ÿ’ป๐ŸŒฟSynthetic data for training image processing artificial intelligence
#FSPM #CPlantBox @unrealengine.bsky.social

botany.one/2024/04/harn... from @botany.one

2 years ago 2 4 0 0
image of a plant, with root and shoot, and hydraulic resistance to water between the different organs

image of a plant, with root and shoot, and hydraulic resistance to water between the different organs

๐Ÿงช๐ŸŒพ #paperalert

Check our latest paper in Plant Direct, by Juan Baca Cabrera.

onlinelibrary.wiley.com/doi/10.1002/...

Juan collected root hydraulic data from the literature & compiled it into a shared database (roothydraulic-properties.shinyapps.io/database).

2 years ago 12 9 1 0
Advertisement
Home environment predicts root anatomy in Mexican native maize. (a) Random forest (RF) modeling for the ratio of total stele area:total cortical area. Accession point of origin colored by observed TSA:TCA from Burton et al. (2013). Trait-specific significant environmental descriptors used for RF model construction. Smoothed RF predicted TSA:TCA for native Mexican maize. (b) RF predicted vs observed TSA:TCA values for all individuals used in model training and validation. (c) Composite GRANAR representation of observed (obs) and predicted (pred) GRANAR sections for the accessions with the lowest (low, pink) and highest (high, green) observed TSA:TCA. Predicted GRANAR cross-sections use predictions for all traits for which RF models were constructed. Hydraulic properties were estimated with MECHA

Home environment predicts root anatomy in Mexican native maize. (a) Random forest (RF) modeling for the ratio of total stele area:total cortical area. Accession point of origin colored by observed TSA:TCA from Burton et al. (2013). Trait-specific significant environmental descriptors used for RF model construction. Smoothed RF predicted TSA:TCA for native Mexican maize. (b) RF predicted vs observed TSA:TCA values for all individuals used in model training and validation. (c) Composite GRANAR representation of observed (obs) and predicted (pred) GRANAR sections for the accessions with the lowest (low, pink) and highest (high, green) observed TSA:TCA. Predicted GRANAR cross-sections use predictions for all traits for which RF models were constructed. Hydraulic properties were estimated with MECHA

๐ŸŒฝCheck out the fascinating role of root anatomical variation in maize adaptation to diverse climates and soils. ๐ŸŒพ

Congrats to Chloee: chloeemclaughlin.wordpress.com and the other co-authors.
A nice paper just before the defense of her PhD

๐Ÿ”“ doi.org/10.1111/eva....

#RootAnatomy #GxE ๐ŸŒฑ๐Ÿ”ฌ๐Ÿงช

2 years ago 3 5 0 0
Preview
ggPlantmap: an open-source R package for the creation of informative and quantitative ggplot maps derived from plant images ggPlantmap, a new addition to the plant data visualization toolbox, allows users to create graphical maps from plant images for the representation of spatial qu

The final version of the ggPlantmap is out at @jxbotany.bsky.social
academic.oup.com/jxb/advance-...
Come for the information, stay for the beautiful figures!
We hope it can encourage people to create their own eFP-viewer!

2 years ago 25 13 1 0