CPlantBox: a fully coupled modelling platform for the water and carbon fluxes in the soil–plant–atmosphere continuum Abstract. A plant’s development is strongly linked to the water and carbon flows in the soil–plant–atmosphere continuum. Expected climate shifts will alter

💻 💧 #CPlantBox: a fully coupled #modelling platform for the water and carbon fluxes in the soil-plant-atmosphere continuum
doi.org/10.1093/insi... #CPlantBox #PlantScience

🌿💧 Phloem anatomy restricts #root system architecture development: theoretical clues from in silico experiments
doi.org/10.1093/insi... #CPlantBox #PlantScience

Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake Abstract. Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the sel

💧 Collaborative benchmarking of #FSPM models: Quantitative comparison of simulated root water uptake
doi.org/10.1093/insi... #CPlantBox #PlantScience

CPlantBox: a fully coupled modelling platform for the water and carbon fluxes in the soil–plant–atmosphere continuum Abstract. A plant’s development is strongly linked to the water and carbon flows in the soil–plant–atmosphere continuum. Expected climate shifts will alter

💧 #CPlantBox: a fully coupled #modelling platform for the water and carbon fluxes in the soil-plant-atmosphere continuum
doi.org/10.1093/insi... #CPlantBox #PlantScience

💧 Phloem anatomy restricts #root system architecture development: theoretical clues from in silico experiments
doi.org/10.1093/insi... #CPlantBox #PlantScience

Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake Abstract. Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the sel

💧 Collaborative benchmarking of functional-structural root architecture #models: Quantitative comparison of simulated root water uptake
doi.org/10.1093/insi... #FSPM #CPlantBox #PlantScience

☀️🌾 Virtual world coupling with #photosynthesis evaluation for synthetic data production
doi.org/10.1093/insi... #PlantScience #FSPM #CPlantBox #UnrealEngine

Introducing Synavis, a framework that generates synthetic data for training deep learning models using #UnrealEngine
doi.org/10.1093/insi... #PlantScience #DeepLearning #CPlantBox

Virtual World Coupling with Photosynthesis Evaluation for Synthetic Data Production Abstract. In this work, we couple the functional-structural plant model CPlantBox to the Unreal Engine by exploiting the implemented raytracing pipeline to

This work couples the FSPM #CPlantBox to the Unreal Engine by exploiting the implemented lighting pipeline to evaluate light influx on the plant surface.

Read the article: doi.org/10.1093/insi...

🌿 Models Explain How Phloem Anatomy Restricts #Root System Architecture Development
by Xiao-Ran Zhou, Andrea Schnepf, Jan Vanderborght, Daniel Leitner, Harry Vereecken, Guillaume Lobet
doi.org/g732cf #CPlantBox #FSPM #PlantScience

🌿 Introducing a pipleline for the creation of synthetic data for #modelling
by Dirk Norbert Baker, Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Þora Hvannberg, Morris Riedel
doi.org/pfrz #FSPM #CPlantBox #PlantScience

💻 🌿 Introducing a pipleline for the creation of synthetic data for #modelling
by Dirk Norbert Baker, Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Þora Hvannberg, Morris Riedel
buff.ly/3NmsClu #FSPM #CPlantBox #PlantSci…

💻 🌿 Models Explain How Phloem Anatomy Restricts #Root System Architecture Development
by Xiao-Ran Zhou, Andrea Schnepf, Jan Vanderborght, Daniel Leitner, Harry Vereecken, Guillaume Lobet
https://buff.ly/3RqJNoV #CPlantBox #FSPM #PlantScience 🧪

Introducing the new CPlantBox Computational model may help unravel the complex processes of drought tolerance.

Introducing the new #CPlantBox
📰 Story: https://buff.ly/4ghASQi via @botanyone
🔬 Research: https://buff.ly/3PKZw18
#PlantScience 🧪#FSPM

Five Root Models Compete in Benchmarking Challenge
📰 Story: https://buff.ly/4foIaRZ via @botany.one
🔬 Research: https://buff.ly/4fqcQSR
#CPlantBox #OpenSimRoot #PhenoRob #FSPM #PlantScience 🧪

CPlantBox: a fully coupled modelling platform for the water and carbon fluxes in the soil–plant–atmosphere continuum Abstract. A plant’s development is strongly linked to the water and carbon flows in the soil–plant–atmosphere continuum. Expected climate shifts will alter

💻🍃 Latest implementation of #CPlantBox - water and #carbon fluxes in the #soil–plant–atmosphere continuum

https://buff.ly/3PKZw18 #FSPM #PlantScience 🧪

Geographical variability of SRN in traditional varieties of maize (n = 2,424). SRN was determined in globally collected traditional varieties of indicated geographical origin. Domestication and expansion times4 for maize populations are indicated accordingly. The global map of average annual precipitation between 1991 and 2020 is derived from NOAA’s Climate.gov (https://www.climate.gov) and WorldClim prec 30 s (https://www.worldclim.org/data/worldclim21.html#google_vignette). The map was produced in R (v.4.2.2) with the packages ‘maps’ and ‘raster’.

Standard uptake fraction of seminal roots and lateral roots as a function of Seminal Root Number (SRN). For each SRN, the average proportion of water uptake per root type is expressed as a ratio relative to overall water uptake. The relative contribution to water uptake is considered separately for the primary root, lateral roots initiated from the primary root, total seminal roots and lateral roots initiated from seminal roots. Note that some of the traditional varieties with lower SRNs already formed very short crown roots but their contribution to water uptake is not considered.

Excited to share this work on maize root domestication & adaptation to global water availability! 🌱💧🧪

🌍 Thanks to Peng Yu and all collaborators

🔗https://www.nature.com/articles/s41588-024-01761-3

In addition, there are some cool root water models in use 😉 #CPlantBox #GRANAR-MECHA #MARSHAL

Harnessing the Power of Synthetic Data for Deep Learning ... The Synavis framework provides a solution to overcome dat...

💻🌿Synthetic data for training image processing artificial intelligence

#FSPM #CPlantBox @UnrealEngine @DirkHelmrich @MorrisRiedel

botany.one/2024/04/harnessing-the-p... from @botanyone

Harnessing the Power of Synthetic Data for Deep Learning Image Analysis The Synavis framework provides a solution to overcome data scarcity for training deep learning biological image analysis models.

💻🌿Synthetic data for training image processing artificial intelligence
#FSPM #CPlantBox @unrealengine.bsky.social

botany.one/2024/04/harn... from @botany.one

💻🌾 The new implementation of #CPlantBox w/ #PiafMunch and #DuMux provides comprehensive models that can simulate the feedback loops between a plant's 2D development and water and carbon flow #FSPM

https://buff.ly/3PKZw18 from @fz_juelich @UCLouvain_be @CAVElab_UGent

💻🌿 A new framework that supports direct and scalable coupling of realistic #FSPM visualization with #UnrealEngine

#Synavis #FSPM #CPlantBox

doi.org/10.1093/insi... from Dirk Helmrich, Felix Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Hvannberg and Morris Riedel

NEW! A Scalable Pipeline to Create Synthetic Datasets from #FSPM for Deep Learning
https://buff.ly/3NmsClu from @DirkHelmrich Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Hvannberg & @MorrisRiedel
#DeepLearning #CPlantBox

NEW! A Scalable Pipeline to Create Synthetic Datasets from #FSPM for #DeepLearning

doi.org/10.1093/insi... from Dirk Helmrich, Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Hvannberg & Morris Riedel

#CPlantBox

🌿 🌧️ Exploring the Dynamics of #Water and #Carbon Flows in Plants Under #Drought: Insights from the #FSPM #CPlantBox

from Mona Giraud and colleagues from @fz_juelich @CAVElab_UGent

https://buff.ly/3PKZw18

NEW!
Five leading #root architecture #models go head-to-head in a groundbreaking study on water flow in soil and roots

https://buff.ly/44AIAyQ from @guillaume@scholar.social @Valentin@mstdn.science

#FSPM featuring #DuMux #CPlantBox #RSWMS #OpenSimRoot #SRI

NEW!
#CPlantBox: a fully coupled modeling platform for the water and carbon fluxes in the Soil-Plant-Atmosphere-Continuum

#FSPM #root #plant #model

https://buff.ly/3PKZw18 from Mona Giraud and colleagues

Crops in silico » 2022 Annual Meeting

Register now for the Crops in silico Symposium and #Hackathon #2022cis

May 11-13, 2022

Hackathon featuring:
#BioCro II #OpenSimRoot #CPlantBox #openAlea #Helios @ucdplantsimlab

https://bit.ly/3KdK4oF

A new whole-plant framework simulates realistic water and carbon flow

@zxrzxr @guillaumelobet @UMR_PIAF #OpenScience #CRootBox #CPlantBox

🔬 #OpenAccess research: https://doi.org/10.1093/insilicoplants/diaa001
📰Story: https://bit.ly/2XSg1QB from @botanyone

ICYMI🌿

#CPlantBox, a whole #plant #modelling framework for the simulation of water and carbon related processes @zxrzxr @guillaumelobet @UMR_PIAF #OpenScience #CRootBox

#OpenAccess 👉🏾 https://bit.ly/3AE5Jl9

#CPlantBox is capable of simulating the growth and development of a variety of plant architectures (root and shoot)

@zxrzxr @guillaumelobet @UMR_PIAF #OpenScience #CRootBox

https://bit.ly/2NlqT3R