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Posts by Duncan Kountz

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1/ Excited to share our preprint! 🥳

Degradation of aromatic compounds, including BTEX pollutants, requires highly endergonic aromatic ring reduction. Using #cryoEM and in situ #cryoET, we show how BCRII couples electron bifurcation modules in one giant redox machine

www.biorxiv.org/content/10.6...

1 week ago 95 37 5 4

How do “LEGO-like” electron-bifurcating modules combine to drive degradation in BTEX-contaminated ecosystems?

Check out our latest preprint, where we use cryo-EM and cryo-ET to reveal how the 1 MDa BCRII complex powers extremely endergonic aromatic ring reduction.
www.biorxiv.org/content/10.6...

1 week ago 27 14 1 1
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I’m a Nobel Prize-winning immigrant. I can no longer recognize this country. Attacks on science and immigrants are destroying America.

Jack Szostak "All of these things frighten me, and they should frighten you as well. I made the decision to create a life for myself here, because I viewed this as a place that rewarded determination, hard work, and integrity. It still has a chance to be that place again."

1 week ago 401 139 5 9

I just completely fell for something that I initially thought was satire because it was so crazy. On further inspection, it was actually satire.

3 weeks ago 1 0 0 0
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“Einstein was a patent clerk [not a physicist]” tells me that biology isn’t the only thing he doesn’t know anything about

3 weeks ago 0 0 0 0

Just got an email from my grad school’s Graduate Research Fund asking me to donate. The really amusing part is that the email addresses me as “Mr. Kountz”. I mean, if there was any organization that should know that I have a PhD…

4 weeks ago 1 0 0 0

Solved!

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Isolation and characterization of 22 mesophilic methanococci Twenty-two strains of mesophilic methanococci were isolated from salt marsh and other intertidal sediments of the southeastern United States. All the …

Okay methanogen people (and particularly Methanococcus people): Does anyone have access to this publication?:

www.sciencedirect.com/science/arti...

If you do, could you DM me so I can send you my email (and then you could send me the pdf?)

4 weeks ago 0 0 1 0
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A genetic toolkit for the human gut bacterium Mediterraneibacter gnavus identifies capsular polysaccharides as a competitive colonization factor - Nature Communications Here, the authors develop tools to genetically modify Mediterraneibacter gnavus, a human gut bacterium associated with disease, showing that capsular polysaccharides are key for intestinal colonizatio...

A genetic toolkit for the human gut bacterium Mediterraneibacter gnavus identifies capsular polysaccharides as a competitive colonization factor

www.nature.com/articles/s41...

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Ex: “Oh you’re from china? Are you a CCP member?”

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I mean I’m not really sympathetic to MAGAs who face social consequences for their politics, but I have to admit that in analogous contexts such a question would be strange and fairly rude

1 month ago 1 0 1 0
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ATP synthase activity boosts membrane proton acceptance and lateral diffusion | PNAS In most organisms, ATP synthesis is powered by the proton motive force (pmf) and catalyzed by ATP synthase. While the chemiosmotic theory originall...

📣 I was waiting for this paper for a while 🥳
Our new paper in @pnas.org shows that ATP synthase drastically alters membrane properties related to proton diffusion. Funded by @volkswagenstiftung.de
www.pnas.org/doi/abs/10.1...

1 month ago 8 5 0 0
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"There isn't one 'single right way' for a career - and it doesn’t have to be a straight line" Maren Nattermann, Research Group Leader at the Max Planck Institute for Terrestrial Microbiology, on Marjory Stephenson (1885–1948): pioneer of chemical microbiology, whose work on bacterial metabolic...

"My motto is: just do it!" We love this interview w/ Maren Nattermann, Research Group Leader @ Max Planck Institute for Terrestrial Microbiology, on Marjory Stephenson (1885–1948), pioneer of chemical microbiology as well as her own path into science www.mpg.de/26210626/mar... #IWD2026

1 month ago 26 9 0 0

Hey, I know that building!

1 month ago 1 0 0 0
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Happy to share our new paper on proton transfer in metalloenzymes, out now in @pccp.rsc.org!
Exploiting crystallography, electrochemistry, FTIR spectroscopy, and QM calculations we identified a Zundel ion in the catalytic proton tranfer pathway of [FeFe]-hydrogenase.
doi.org/10.1039/D5CP...

1 month ago 12 5 1 0

I do what I can, but with spectroscopy humor added

1 month ago 1 0 1 0
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Maybe this is just me, but whenever someone says Mossbauer I think of the book Mossflower in the Redwall series. I can’t be the only one.

1 month ago 3 1 1 0
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Structural insights into metallocluster trafficking in the nitrogenase assembly scaffold NifEN - Nature Catalysis Structural insights into the assembly of the complex nitrogenase cofactor are scarce. Now, cryo-EM and AlphaFold analyses of NifEN, which converts the precursor (L-cluster) to a mature cofactor (M-clu...

So excited to share our cryo-EM study of the nitrogenase cofactor assembly scaffold NifEN expressed in E. coli!
@ribbehulab.bsky.social @ucibiosci.bsky.social @natcatal.nature.com
www.nature.com/articles/s41...

1 month ago 20 5 1 0
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Today, I inoculated a methanogen culture for the first time in at least 10 years. Believe it or not

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For red substrate, the reaction is strongly cooperative in the absence of the regulator, but loses the cooperatively when the regulator is present. For the blue substrate, the opposite: the reaction is non-cooperative in the absence of the regulator and strongly cooperative in its presence

2 months ago 1 0 0 0
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Pretty allosteric regulation data from a manuscript I'm writing on my PhD work. Red and blue data are from two alternative substrates. Filled symbols = absence of allosteric regulator. Open symbols: presence of allosteric regulator. X-axis is mM substrate

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Coincidentally, your similar long distance from home came to mind when I was writing this post

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I’ve had a really positive experience in Germany so far, but from time to time I get a deep feeling of sadness from being so far from home. Not a new thing for a human to experience of course

2 months ago 4 0 1 0
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Evolutionary bioenergetics of sporulation | PNAS Energy is required for the expression and maintenance of complex traits. In many habitats, however, free energy available to support biosynthesis i...

Evolutionary bioenergetics of sporulation

"energetic cost of sporulation in units of ATP by integrating time-resolved genome, transcriptome, and proteome profiles"
#Bsubtilis #MicroSky

#PNAS by @ckarakoc.bsky.social @shoestrapped.bsky.social @jaytlennon.bsky.social

www.pnas.org/doi/10.1073/...

2 months ago 17 4 0 0

Does anyone know a good commercial source of rumen fluid in Europe (Germany in particular)? Maybe I just need to start cultivating a relationship with farmers...

2 months ago 0 1 0 0
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Delineation of the Active Site of MtgB, a Cobalamin-dependent Glycine Betaine Methyltransferase The MttB superfamily member MtgB catalyzes the methylation of a cognate corrinoid protein with glycine betaine and representatives have been described…

From Joe Krzycki's, Bing Hao's and @djferguson.bsky.social 's labs:

Delineation of the Active Site of MtgB, a Cobalamin-dependent Glycine Betaine Methyltransferase

www.sciencedirect.com/science/arti...

2 months ago 1 0 0 0

*heftig

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My Duolingo lesson yesterday was “describe the weather” and life has given me an opportunity to practice

2 months ago 0 0 0 0
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Das wetter ist sehr schlecht. Es schneit hefting und ich bin kalt

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Or the fact they appear to all be full of solidified lb agar?

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