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Amazing BlueSky Summer Sale
Your choice: Any of the #BioVoxxel online self-learning courses
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The first 10 participants that enroll in the next 10 days get 10% OFF
Use the code "BSKY101010" at checkout to redeem your discount.
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Embark on your journey to become an #ImageAnalysis champion today! 🏅 🏆
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1. Basic Microscopic Image Analysis
2. Automate Analyses with #ImageJ #Macro #Scripting
3. Transform Pixels to Patterns with #MachineLearning
#Fiji #BioVoxxel
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#Automation #BioVoxxel
Thanks for this very nice publication and the comprehensive summary on #imageanalysis trainings.
I can fully corroborate it. It is 100% consistent with my own experience over the last 12 years doing full time bioimage analysis workshops for young life scientists.
#bia #microscopy #FIJI #biovoxxel
A screenshot showing the use of the Windows ColourSimulatons app to quickly check color blind friendly display and color usage in images. It shows one image of fluorescently stained cells while combining red, green and blue colors and another one using cyan, yellow and magenta together with the apps sliding window that simulates the color blind vision on screen. Additionally it displays the pop-up menu for the tool.
#BIAToolTip No.15
On Windows there is the ColourSimulator App which allows you to simulate on your screen with a slidable window to inspect design or images to check if those are inclusive for color deficient vision.
The #biovoxxel LUT Channels Tool provides a related functionality.
#BIAToolTip No.10 (SPECIAL)
NEW release of #biovoxxel Figure Tools v4.0.0.
Now, interactive merge images can be created as mentioned here: bsky.app/profile/biov...
All channel combinations can be checked in the resulting SVG files when opened in the browser.
#BIAToolTip No.9
Catching the ball from @guijacquemet.bsky.social and his NeuroCyto LUTs post. The LUT Channels Tool from the #biovoxxel Figure Tools can be equipped with any LUTs in the IJ lut folder or your favorite LUTs in a subfolder. Comes with all IJ channel functions and a color blind test.
The #biovoxxel figure tools provide a convenient way in saving SVG vector graphic from Fiji and create publication figures in Inkscape.
Thanks to Ved Sharma those SVGs can now also be opened in the browser and even in Adobe Illustrator, if you really have to use it (I won't blame you 😉)
#BIAToolTip No.6
Object or label separation, especially in 3D, are not trivial but the Label Splitter from the #biovoxxel 3D box if offering several algorithms that reduce bleed-over into neighboring objects.
Doc: biovoxxel.github.io/bv3dbox/#lab...
Video: youtu.be/H-NWVafWLfo?...
#BIAToolTip No.5
3D Object segmentation mostly involves object separation.
Both works often better if you have isotropic voxels!
"Make 3D Image Isotropic" or "Make Voxel Isotropic" from the #biovoxxel 3D box does this straight forward.
forum.image.sc/t/imagej-nuc...
All those contrast adjustments done with the contrast optimizers from the #biovoxxel figure tools are recordable, repeatable, and write the changes into the image's metadata for full traceability and transparancy.
#BIAToolTip No.3
In this thread I will introduce several of the #biovoxxel figure tools for Fiji that allow you to prepare images for scientific figures in line with GSP and preserving image quality as well as data integrity 100%
github.com/biovoxxel/Bi...
In Fiji / ImageJ you can check it under Image › Color › Simulate Color Blindness or using the indicated button in the image below via the LUT channels tool from the #Biovoxxel Figure Tools which has much more to offer and I will feature this in the next #BIAToolTip post.
