A comprehensive survey of genome language models in bioinformatics. #GenomeLanguageModels #gMLs #ModelsReview #Bioinformatics #Genomics #BriefingsInBioinformatics
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The current landscape and emerging challenges of benchmarking single-cell methods. #SingleCell #SequencingData #Bioinformatics #Genomics #Benchmarking #BriefingsInBioinformatics 🧪🧬 🖥️
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Deep learning–driven multi-omics analysis: enhancing cancer diagnostics and therapeutics. #DeepLearning #MultiOmics #CancerDiagnostics #BriefingsInBioinformatics
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Benchmarking transcription factor binding site prediction models: a comparative analysis on synthetic and biological data. #TranscriptionFactorBindingSite #TFBS #Benchmarking #BriefingsInBioinformatics
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Benchmarking of computational demultiplexing methods for single-nucleus RNA sequencing data. #SingleCell #scRNAseq #Demultiplexing #Benchmarking #BriefingsInBioinformatics 🧬 🖥️
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VirulentHunter: deep learning-based virulence factor predictor illuminates pathogenicity in diverse microbial contexts. #MicrobialPathogenicity #DeepLearning #BriefingsinBioinformatics #Bioinformatics 🧬 🖥️
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Evaluating long-read assemblers to assemble several aphididae genomes Abstract. Aphids are a speciose family of the Hemiptera compromising >5500 species. They have adapted to feed off multiple plant species and occur on ev

Evaluating long-read assemblers to assemble several aphididae genomes. #LongReads #GenomeAssemblies #AphididaeGenomes #BriefingsInBioinformatics #Bioinformatics 🧬 🖥️
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Multimodal deep learning approaches for precision oncology: a comprehensive review Abstract. The burgeoning accumulation of large-scale biomedical data in oncology, alongside significant strides in deep learning (DL) technologies, has est

Multimodal deep learning approaches for precision oncology: a comprehensive review. #PrecisionOncology #MultimodalDeepLearning #Genomics #Review #BriefingsInBioinformatics
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Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data Abstract. Third-generation sequencing platforms, such as Oxford Nanopore Technology (ONT), have made it possible to characterize communities through the se

Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data. #FullLength16S #Amplicons #Sequencing #BriefingsInBioinformatics #Bioinformatics 🧬 🖥️
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Graph databases in systems biology: a systematic review Abstract. Graph databases are becoming increasingly popular across scientific disciplines, being highly suitable for storing and connecting complex heterog

Graph databases in systems biology: a systematic review. #GraphDatabases #SystemBiology #Genomics #Bioinformatics #BriefingsInBioinformatics 🧬🖥️
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A gentle introduction to pangenomics Abstract. Pangenomes have emerged in response to limitations associated with traditional linear reference genomes. In contrast to a traditional reference t

A gentle introduction to pangenomics. #Pangenomics #BriefingsInBioinformatics 🧬🖥️🧪
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