Virtual workshop on #genomics analysis for #RADSeq - spaces available Jan 13-16th! Live instruction by @noahreid.bsky.social Learn #NGS read QC, #variant detection, and data analysis via common #bioinformatic tools - #Stacks #Freebayes @uconnresearch.bsky.social @cbcuconn.bsky.social
Join us Jan 13–16 for a Virtual RAD-seq Workshop! Learn the complete RAD-seq analysis workflow. Beginner-friendly—no experience needed! 📅 10 AM – 2 PM ET 💻 MS Teams + recording 💰 $500 ($400 UConn) Register: bioinformatics.uconn.edu/cbc-workshops/ #RADseq #Bioinformatics #Genomics
Virtual workshop on #genomics analysis for #RadSeq - spaces available still for next week - Dec 16-18th! Live instruction by @noahreid.bsky.social Learn QC through data analysis using common #bioinformatic tools - #Stacks #Freebayes @uconnresearch.bsky.social @cbcuconn.bsky.social
Thanks to Tereza, Natalia and everyone who have joined us this week for the 6th edition of the course on #RADseq data analysis using #Stacks
Thanks everyone and good luck with your data🤙
If you want to learn how to analyse RADseq data using Stacks, you can still join us for this course starting next week
#RADseq #Stacks
www.physalia-courses.org/courses-work...
Registration is still open for our upcoming online course RAD-Seq Data Analysis (27–31 October).
This 5-day training will guide participants through the complete workflow of RADseq data, with a strong focus on data analysis using Stacks.
www.physalia-courses.org/courses-work...
#RADseq #Stacks
Registration is now open for the next edition of the #RADseq data analysis using Stacks course with @naiarare.bsky.social Tereza and Natalia!
🔗 www.physalia-courses.org/courses-work...
Anita Wray, Lorenz Hauser, et al. used #RADSeq to characterize hybridization & structure within & among 3 Rockfish species in the Puget Sound. They found asymmetry in gene flow, with evidence of Quillback hybridization impacting the genetic structure of Cooper & Brown Rockfish populations #ConsGen
Molly Garrett, Lisette Waits, et al. derived a #GTSeq panel for genotyping low quality tissue from the ESA-listed northern Idaho Ground Squirrel throughout it's extant range. They were able to recover population assignments and diversity stats similar to #RADSeq data, useful for monitoring #consgen
Happy to release Stacks v2.67 today. This release updates process_radtags to make it easier to use SRA data and to filter poly-G (error) runs coming from Nextseq/Novaseq machines + bugfixes. We also added a genotype depth filter to populations #RADseq
catchenlab.life.illinois.edu/stacks/
🚨 Ready to master #RADseq data analysis with #Stacks? Join our course led by the amazing @naiarare.bsky.social , @TerezaManousaki, and @NataliaDA10!
👉 Grab your spot here – only a few seats left! ⏳
www.physalia-courses.org/courses-work...
🚨Very happy to inform you that our #RADseq course is back!
‼️🚀Save the date and join us in November to learn how to analyse your RADseq data with this stellar team of instructors @naiarare.bsky.social Tereza and Natalia 🤩
✏️physalia-courses.org/courses-workshops/course...
A few seats remain! @UConn_Bioinfo is offering virtual #RadSeq #ddRAD analysis training starting Mon! March 18-21 Join us (real instructors): #Stacks, #Freebayes, @rstatstweet - best practices in #variant detection & basic pop. assessments @UConnResearch...
@cbcuconn.bsky.social is offering virtual training #ddRAD #RadSeq analysis! Best practices in #variant detection - how to use common packages - #Stacks, #Freebayes, #R! Real instructors online - March 18th-21st bioinformatics.uconn.edu/cbc-workshops/
Kudos to this outstanding team of instructors
@TerezaManousaki, @naiarare.bsky.social and
@NataliaDA10, who have guided us through the intricate world of #RADseq data analysis. Their expertise has empowered our group of attendees, leaving them better equipped to navigate their own data.
Chromosome genome scan showing private alleles from two species in a hybrid population
Zoomed in 1Mbp region showing private alleles having introgressed into hybrid populations (dark blue vertical lines)
I have been having a lot of fun revising private allele analysis in #Stacks from #RADseq data. What are private alleles? Given SNPs in a set of populations, a private allele is found only in a specific population. 1/n
When using #RADseq with a reference genome, how close does your ref genome species need to be? A Shafer looked @ this (besjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/20... are there examples? Help! @AndrewLHipp @DavidBLowry @acer_aceae @jasonaholliday...
Lastly, come learn about the incredibly flexible, fast, and accurate #RADseq pipeline dDocent at the #iEvolBio software bazaar. I may not always be there, so please reach out on twitter if you need to find me.
http://www.dDocent.com
The #dDocent pipeline now has a revamped website containing all sorts of #RADseq #Bioinformatics goodies.
http://dDocent.com
ICYMI: What can RADseq tell us about sex-biased dispersal in sharks?
http://goo.gl/ARz4gg
#dDocent #RADseq #genomics
What can RADseq tell us about sex-biased dispersal in sharks?
http://goo.gl/ARz4gg
#dDocent #RADseq #genomics
Got the Mondays? ddRAD and ezRAD bioinformatics got major update. dDocent v2 is out! http://github.com/jpuritz/dDocent #RADseq #bioinformatics #NGS
ICYMI: ddRAD and ezRAD bioinformatics gets major update today. dDocent v2 is now out! https://github.com/jpuritz/dDocent #RADseq #bioinformatics #NGS
ddRAD and ezRAD bioinformatics gets a major update today. dDocent v2.0 is now out! https://github.com/jpuritz/dDocent #RADseq #bioinformatics #NGS
ICYMI: Big dDocent Update! Includes tutorials on reference assembly and SNP filtering! Better #RADseq bioinformatics
https://github.com/jpuritz/dDocent
Big dDocent Update!! Includes tutorials on reference assembly and SNP filtering! Better #RADseq bioinformatics.
https://github.com/jpuritz/dDocent
ICYMI, lower level 3pm. Check out my #PAGXXIII poster on library bias in ddRAD sequencing http://shar.es/1HNOA6 via @figshare #RADseq #NGS
Check out my #PAGXXIII poster on library bias in ddRAD sequencing http://shar.es/1HNOA6 via @figshare #RADseq #NGS
More disagreement between demographic inferences based on #microsatellites vs those based on #RADseq: onlinelibrary.wiley.com/doi/10.1111/mec.12636/ab... @EEPuckett
Interesting results comparing #RadSeq and #microsatellites for population #structure analysis from Rich Hodel at UF #botany2014
