Scalable and unbiased sequence-informed embedding of single-cell ATAC-seq data with CellSpace - Nature Methods By learning to embed DNA k-mers and cells into a joint space, CellSpace improves single-cell ATAC-seq analysis in multiple tasks such as latent structure discovery, transcription factor activity infer...

#sciencethread Christina Leslie describing Cell Space #ICSB2024 - embedding of DNA peaks (eg ATAC-seq kmers) into a common latent space. #SystemsGenomics doi.org/10.1038/s415...