With the release of anvi'o v9, the 300k+ contigs databases available for download on the GlobDB website are now compatible with both the development version and the latest stable release (v9) of anvi'o.

More info:
globdb.org/news

Thanks #anvio team!
🖥️🧬🦠

We just released #anvio v9, "eunice" 🎉

This version represents over 2,000 changes in the codebase since v8, increasing the total number of programs in the anvi'o ecosystem to 176.

Read the release notes:

github.com/merenlab/anv...

Visit our up-to-date web page:

anvio.org

anvi-report-circularity An anvi'o program. Predict contig circularity from paired-end read alignments in a given BAM file.

Need to predict whether a given contig in your assembly was circular in the environment?

Here is a new program in #anvio ecosystem that will look into your BAM file and use paired-end read mapping data to conservatively assess circularity:

anvio.org/help/main/pr...

Are you are working with seqeunces? Does diversity matter to you? Well, then you will love #anvio 🥲

We have a date for the free-to-attend #anvio workshop and ECR Symposium for 2026, and we look forward to meeting you at the @hifmb.de in Oldenburg, Germany!

Please find more information on the venue, program, and the application form here, and spread the word 😇

anvio.org/workshops/20...

A screenshot of the header for the tutorial linked in the post

In other news, I just had the great pleasure of teaching at #EBAME10 in Brittany 🇫🇷🥐.

For this workshop, I made a tutorial showing how to use radEmu with the taxonomic profiling output of #anvio 😍😻

Workflow available for everyone on our blog: statdivlab.github.io/blog/article...

❤️❤️

Competitive metagenomic read recruitment explained A tutorial on the nuts and bolts of competitive read recruitment

I wrote a new tutorial on competitive metagenomic read recruitment (and profiling of the results with #anvio), for those of us nerds who would like to get their hands dirty with data:

anvio.org/tutorials/co...

while i AM looking forward to (someday) trivially assembling single contig MAGs from long-read data... picking out coherent contig clusters in #anvio will always be very satisfying!

Have you ever looked at some differentially occurring gene clusters in a microbial #pangenome and thought to yourself "I wonder if they contribute to any metabolic modules"?

With the most recent changes, the answer is a few clicks away in #anvio 😇

Thank you @floriantrigodet.bsky.social, Iva Veseli, and @merenbey.bsky.social for organizing such a wonderful #anvio workshop last week. Thanks also to all ECRs for the friendly & enriching exchanges. Back home with plenty of new ideas! We were blessed with a whole week of literally #bluesky. ☀️

I had such a great time learning #anvio last week ! Thank you @floriantrigodet.bsky.social, Iva Veseli and @merenbey.bsky.social for putting together this workshop 😊

Photos and survey results form the anvi'o workshop and ECR symposium at Oldenburg Hither shalt thou find likenesses trapped in time, and the opinions of those who did attend this noble workshop

A blog post on the #anvio workshop that took place last week at the @hifmb.de in Oldenburg with photographs and participant survey results 😇

anvio.org/blog/oldenbu...

Thank you Iva Veseli and Florian Trigodet for giving such the useful lectures! And thanks for all the TAs being so patience and taking care for us.

Thanks to ISME Scholar Program covered my trip in Oldenburg, and I hope to spread the info for anyone needs it.

I gave a flash talk and got some positive feedbacks. Shout out to my supervisors and collaborators.

Lovely anvi’o sticker!

Last day in #anvio workshop and ECR symposium, in Oldenburg.Thanks Meren @merenbey.bsky.social
for hosting such a great event for people in microbiome. It was a very fruitful week.
Thanks to ISME scholar program @isme-microbes.bsky.social covered this trip.

#my-1st-bluesky-post

Great week ahead! #anvio 💻🦠🧬

The first #anvio workshop at our brand new @hifmb.de building in Oldenburg has just started with around 50 individuals who represent a wide range of locations, scientific interests and career levels :')

Very excited for this week and thankful for Iva Veseli and Florian Trigodet!

If you have been using #anvio to analyze your microbial pangenomes, we have a new program for you to calculate rarefaction curves or Heaps' Law fit for your gene clusters:

anvio.org/help/main/pr...

Sorry it took this long :/ But at least t will run on any existing anvi'o pangenome :)

I just wanted to send a quick update and thank the 70+ people who applied for the upcoming #anvio workshop and ECR symposium in Oldenburg so far.

We are very encouraged with the geographical diversity, which has been one of our main concerns. The applications are open until January 10.

Learning and networking opportunity, Oldenburg, Germany
#anvio #microsky.⬇️

We are very happy to announce a free-to-attend #anvio workshop and ECR symposium in Oldenburg to discuss integrated microbial 'omics and learn applications of anvi'o.

More information and application link (application deadline is Jan 10): anvio.org/workshops/20...

Please apply and/or circulate 😇

Day 2 of training to explore ANVIO with @tomdelmont.bsky.social at IRD Montpellier: an incredibly enriching experience! 🚀 #Bioinformatics #ANVIO

Posters at #ISME19 with anvi'o The purpose of this form is to collect data on ISME19 posters that made use of anvi'o. Just so we, as in anvi'o users and developers, can recognize the kinds of applications people have used anvi'o fo...

Are you going to #ISME19? Will you present a poster? Do you use #anvio for your research?

If yes, yes, and yes, please consider filling out this form so we can bring stickers to your poster, say hi, and ask your advice on how to make anvi'o better.

forms.gle/idoXJbN5bpUP...

Thank you! 😇

The complete genomes enabled highly accurate pangenome analysis (using #anvio), providing clues about the lifestyle and ecological roles of these bacteria.

mucG, mucH, and mucI Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5 | Journal of Bacteriology S. mutans must be able to outcompete neighboring organisms in its ecological niche in order to cause dental caries. S. mutans B04Sm5 inhibited the growth of neighboring commensal streptococci through production of reutericyclins via the muc biosynthetic ...

New publication is out!@JBacteriology @JCVenterInst @UCSDMedSchool #streptococcus #streptococcusmutans #microbiology #Genomics #dentistry #pangenomics
Genome completed and transcriptomics using @nanopore
Pangenomics analysis using #anvio

journals.asm.org/doi/10.1128/jb…

Phylogenomics and pangenomics done with #anvio