New guidelines for discrete #phylogeography introduce an adjusted Bayes factor (BFₐ𝑑𝑗) that integrates sampling-state abundance, reducing false positives in lineage transition inference under bias. #Phylodynamics #Bioinformatics 🧬📊
📄  https://doi.org/10.1093/molbev/msaf253
👤  EVBC: Simon Dellicour

Research Assistant/Associate Job Purpose You will contribute to an international collaborative project entitled “Multi-scale infection dynamics from cells to landscapes: FMD in African buffalo”, working with Prof Roman Biek. T...

Come join us - we are recruiting a postdoc in phylodynamics and epidemiological modelling to join an exciting project on foot-and-mouth-disease virus in African buffalo
www.jobs.gla.ac.uk/job/research...
Please share widely!
#jobs #disease #ecology #evolution #phylodynamics

Jackie’s work on #APMV-1 and #MVEV just shows the remarkable range of questions #sequencing and #phylodynamics can answer - from inferring decades-long evolutionary histories to tracking viral circulation within a single outbreak.

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference - Nature Methods BEAST X advances Bayesian phylogenetic, phylogeographic and phylodynamic analysis by incorporating a broad range of complex models and leveraging advanced algorithms and techniques to boost statistical inference.

BEAST X accelerates Bayesian phylogenetic and phylodynamic inference with enhanced scalability and geo spread modeling.
#BEASTX #Phylodynamics #VirusEvolution
👤EVBC: Philippe Lemey
🔗

Lineage tracing: Dynamics, cellular memory, and somatic evolution Recent advances in high-resolution lineage tracing technologies and single-cell genomics are allowing researchers to quantify cell state dynamics at unprecedented scales. Across cancer and immunity, …

Learn about cellular #phylodynamics approaches at the EMBO Workshop "Lineage tracing: Dynamics, cellular memory and somatic evolution" in Sant Feliu de Guixols, Spain, 18–21 Sep

Abstract submission/Registration deadline: 2/30 Jun

meetings.embo.org/event/25-lin...
#EMBOlineageTracing #EMBOevents 🧪

Journal club attendees

Thanks to everyone who joined yesterday’s IICD Journal Club!👏 Special thanks to Christiaan Hendrik Van Dorp (Yates lab) for a great presentation on Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes (King et al., arXiv 2024). #Phylodynamics #ColumbiaUniversity

Lineage tracing: Dynamics, cellular memory, and somatic evolution Recent advances in high-resolution lineage tracing technologies and single-cell genomics are allowing researchers to quantify cell state dynamics at unprecedented scales. Across cancer and immunity, …

Learn about cellular #phylodynamics approaches at the EMBO Workshop "Lineage tracing: Dynamics, cellular memory and somatic evolution" in Sant Feliu de Guixols, Spain, 18–21 Sep

Abstract submission/Registration deadline: 2/30 Jun

meetings.embo.org/event/25-lin...
#EMBOlineageTracing #EMBOevents 🧪

⏰Two weeks left to apply. Postdoc in #phylodynamics of avian influenza viruses @epidesa.bsky.social @inrae-france.bsky.social @pasteur.fr @erc.europa.eu

🔈We are hiring: postdoctoral position as part of the #TrackFLU project! Interested in fieldwork and #phylodynamics of avian influenza viruses, this is for you! Deadline: April 13th
More info at lnkd.in/dJYeeEsC
@epidesa.bsky.social @pasteur.fr @inrae-france.bsky.social @erc.europa.eu

This month, we're hosting Yik Lim Hew, PhD candidate from Hokkaido University 🇯🇵. His research dives into the epidemiology of #HPAI in Japan, and during his stay, he’ll be investigating outbreaks: tracking introductions, regional spread, and species jumps using #phylodynamics.
@epidesa.bsky.social

Where do I start to study phylogenetics, phylodynamics and evolutionary epidemiology?

Resource recommendations.

#Evolution #phylogenetics #phylodynamics #epidemiology

4/ #Phylodynamics of #H5N1 journey across the US. Clade 2.3.4.4b isn’t just spreading, it’s evolving. Including D1.1 (two severe human cases) and B3.13 (dairy cattle outbreak). Genomic surveillance is critical to guide early interventions and reduce risk of widespread transmission. 🧵 #EpiSky #IDSky