Umite: fast quantification of smart-seq3 libraries with improved UMI retrieval AbstractMotivation. Commercial solutions like 10X cellranger provide robust UMI quantification for their proprietary single-cell protocols, but open method

‪📖 Read about Umite, our smart-seq3 UMI counting pipeline: Umite is robust, memory- and time efficient, and outperforms prior tools in UMI retrieval by 10-15 %, and already packaged in a reproducible Snakemake pipeline

🔗 doi.org/qsnx
by Leo Carl Foerster et al.

#umi #smartseq3 #singlecell