151 - Deacon part 1 In this Software Deep Dive episode, we talk with Dr. Bede Constantinides (University of Birmingham) about Deacon, a tool for removing host DNA reads from metagenomic datasets. We discuss why host read

So cool to hear my colleagues mentioned on my fav podcast 😎

This episode of the #MicroBinfie Podcast on tools for host DNA removal mentions the massive contributions from Sofia Stamouli, Lili Andersson-Li & others (incl Lauri Mesilaakso_, on the #TaxProfiler pipeline!
soundcloud.com/microbinfie/...

Horizontal bar graph of species identified from sequencing reads via Kraken2. The blue portion of each bar is the organism in question: F. tularensis. The other colors represent other organisms.

I've been trying to get some F. tularensis nanopore reads to assemble into genomes or MAGS (some are isolates and some are metagenomic).

At least the taxonomy of the samples looks like it should. #taxprofiler

🧪🧫🖥️🧬🦠