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Posts by Martik Chatterjee

A star scientist showed that better genetics lessons could reduce racism. It was the death knell for his career

The loss of Brian Donovan’s grants and job speak volumes about federal funding priorities — and academia

www.statnews.com/2026/04/07/b...

2 weeks ago 89 50 1 4

I had the opportunity to write a research briefing for Nature, in which I summarized our recent work in African Striped Mice. It’s a short read for anyone who wants a quick overview! www.nature.com/articles/d41...

1 month ago 33 12 0 0
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rambaut/figtree Automatically exported from code.google.com/p/figtree - rambaut/figtree

The first version of FigTree was released nearly 20 years ago and it is still widely used (including by me). But there are currently 85 issues on the GitHub repo (github.com/rambaut/figt...) and some of them I don’t really like the look of.

1 month ago 147 42 3 2
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From our new paper out now in @currentbiology.bsky.social: www.cell.com/current-biol... w/ @neurofishh.bsky.social @gkafetzis.bsky.social @denilsson.bsky.social

Looking across animals, the vertebrate eye is an obvious outlier. Why is it so different that other highly visual animals?

1 month ago 110 40 1 2
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Ancient co-option of LTR retrotransposons as yeast centromeres - Nature Evolutionarily related ‘proto-point’ centromeres providing resolution to the evolutionary origins of point centromeres are identified in yeast, and comparison shows they evolved in an ancestor with re...

Our paper is now out in Nature:

“Ancient co-option of LTR retrotransposons as yeast centromeres”

www.nature.com/articles/s41...

A short thread on how retrotransposons helped give rise to yeast point centromeres.

1/14

2 months ago 234 120 9 10

BREAKING: The Department of Education has ended its directive that attempted to restrict diversity, equity, and inclusion efforts in schools nationwide.

This is a victory for academic freedom and education equity.

2 months ago 40972 10796 475 1015
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Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype-phenotype maps Promoters and enhancers are cis-regulatory elements (CREs), DNA sequences that bind transcription factor (TF) proteins to up- or down-regulate target genes. Decades-long efforts yielded TF-DNA interac...

🧬✨ New 2-part review on the evolution of regulatory DNA (enhancers & promoters)! What started as conversations between Gasper Tkačik @istaresearch.bsky.social and our group @embl.org grew into a broader synthesis.

Preprints here:
Part 1: arxiv.org/abs/2601.19681
Part 2: arxiv.org/abs/2601.21480

2 months ago 11 5 0 0
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Once it became clear that an ICE agent could commit murder in broad daylight with no consequences except the VPOTUS defending him with no heed to the facts and instead vilifying and prosecuting the victim, we opened the door to roving death squads.

But there is no statute of limitations for murder.

2 months ago 83 20 1 0

If this is what they do to white American citizens in front of everyone, imagine what happens to non-white people behind closed doors.

2 months ago 686 196 11 4

Alex Pretti was a colleague at the VA. We hired him to recruit for our trial. He became an ICU nurse- I lover working with him. He was a good kind person who lived to help and these fuckers executed him.

White. Hot. Rage.

2 months ago 60493 18800 1394 734
The commitments in the SAFE Labs Handbook.

The commitments in the SAFE Labs Handbook.

A new community-driven lab handbook for reducing conflict and creating more positive and equitable work environments gets strong support from a survey of 200 researchers.
buff.ly/K7CGFLV

3 months ago 30 10 0 0
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He Studied Why Some Female Birds Look Like Males

"I don’t know why my fellowship was terminated. I suspect that it has something to do with studying a species that doesn’t fit the binary of what we expect to see in nature, with completely different males and females."

@carlzimmer.com profiles my wonderful coauthor @jjinsing.bsky.social Gift link.

3 months ago 585 183 10 15

Live thread of the NSF biology virtual office hour:

🧵

4 months ago 51 30 3 2
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It's out, Minos transgenesis in the pantry moth by
@donyaniyaz.bsky.social
@lucalivraghi.bsky.social

High efficient, glowing eye and silk gland markers

peerj.com/articles/202...
@peerj.bsky.social

5 months ago 46 16 4 4
A nudibranch sea slug with two horn like rhinophores, two oral tentacles and a lot of finger like cerata covering its back  the body is translucent with highlights of blue, orange and brown

A nudibranch sea slug with two horn like rhinophores, two oral tentacles and a lot of finger like cerata covering its back the body is translucent with highlights of blue, orange and brown

Once again I'm begging people not to compare politicians to invertebrates. Inverts are cool and diverse and play an important ecological role. Politicians are the lower order.

5 months ago 141 32 1 1
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Convergent iridescence and divergent chemical signals in sympatric sister-species of Amazonian butterflies Ecological interactions exert contrasting evolutionary pressures on sympatric Morpho butterflies, promoting convergence in iridescence but divergence in chemical cues, illustrating how ecological inte...

My first paper as a first author is officially out 🎉 @elife.bsky.social

We show that the iridescent colour of Morphos 🦋 tends to converge in sympatry while their chemical signals diverge, illustrating the constrasting effect natural and sexual selection on trait evolution.

doi.org/10.7554/eLif...

5 months ago 37 7 1 0
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Pseudouridine selects RNAs for extracellular transport RNAs move through the extracellular space to transmit information between cells, including mammalian neurons, yet how specific RNAs are channeled into these extracellular routes is unknown. Using geno...

What an amazing paper from the Bonasio lab! Domesticated retroviral proteins and RNA-modifying enzymes that regulate RNA loading into and transportation via extracellular vesicles (1/2). www.biorxiv.org/content/10.1...

5 months ago 20 4 1 0

50 years ago, King & Wilson published a foundational paper that underlies the cis-regulatory paradigm (CRP) of #DevoEvo #EvoDevo, i.e., that *almost* all morphological evolution is driven by mutations in regulatory elements, rather than proteins, and it all arose from simple misunderstanding 🧪 🧵

5 months ago 72 32 8 5
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Out now on the cover of @journal-evo.bsky.social!

Led by Sarah Khalil, we took a genomic approach to investigate the hybrid zone between different-colored Red-backed Fairywren subspecies. We found some interesting candidate genes under selection. Check it out! academic.oup.com/evolut/advan...

6 months ago 101 23 2 1
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Revised evolutionary relationships within Brachycera and the early origin of bicoid in flies Mulhair et al. uncover a functional bicoid in non-cyclorrhaphan flies, pushing the gene's origin back by ∼20 million years. Reassessing the Diptera phylogeny using the largest dataset to date permits ...

Latest work out today in @currentbiology.bsky.social

We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬

To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain).

🔗 tinyurl.com/2vyuevpy

6 months ago 93 44 6 4
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Insect populations are declining at an unprecedented rate The most diverse group of organisms on the planet are in trouble and the consequences could be dire.

I still think this #SciComm deserves a #Pulitzer.

#InsectApocalypse
www.reuters.com/graphics/GLO...

6 months ago 29 13 1 2
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World Athletics’ mandatory genetic test for women athletes is misguided. I should know – I discovered the relevant gene in 1990 - Murdoch Children's Research Institute MCRI's Professor Andrew Sinclair SRY gene identifier critiques World Athletics’ new gene testing rule. Read more.

So many issues with this new mandatory genetic test for women. World Athletics’ mandatory genetic test for women athletes is misguided. I should know – I discovered the relevant gene in 1990 www.mcri.edu.au/news/insight...

8 months ago 27 14 1 0
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Programmed meiotic errors facilitate dichotomous sperm production in the silkworm, Bombyx mori The goal of meiosis is typically to produce haploid gametes (eggs or sperm). Failure to do so is catastrophic for fertility and offspring health. However, Lepidopteran (moths and butterflies) males pr...

So excited to share this preprint from the Rosin lab in collaboration with the Hawley lab and @eelcotromer.bsky.social on moth spermatogenesis! We investigate the meiotic errors that occur during the formation of apyrene sperm (that have no DNA) in silkworms!

www.biorxiv.org/content/10.1...

8 months ago 27 12 1 0

My prediction is that in that scenario, he blames the Bureau of Labor Statistics, which puts out employment data. Calls them corrupt, run by Democrats, out to get him. Fires people there, insists their numbers cannot be trusted, White House puts out its own fictitious data to make Trump look good

1 year ago 3264 512 101 268
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Our false head work is out! By analysing ~1000 #butterflies, we found many traits at posterior end of hindwings evolved correlatedly, likely forming a trait complex w/adaptive function to dupe predators into thinking these traits together are actual head!!

royalsocietypublishing.org/doi/10.1098/...

9 months ago 59 20 3 2

As thrilled as I am to share this, it wouldn’t have been possible without other members of @fascinatingpupa.bsky.social lab particularly Sydney Yu (not on Bluesky), a brilliant former undergrad whose honors thesis kicked off this discovery.Super grateful to have had her on this journey! (6/6)

9 months ago 2 0 0 0
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This suggests that fruit fly’s alula may be a reduced vannus, meaning Drosophila wings are just one-third of the ancestral insect wing. To understand how wings evolved into today’s wild diversity, we need to look beyond flies to other broad winged insects like butterflies, moths & more. (5/6)

9 months ago 5 0 1 0
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Knockdown of mirror in fruit fly wings results in the loss of a proximal-posterior lobe called the “alula” – a membranous structure present exclusively in some #Diptera like fruit flies (doi.org/10.1242/dev....). (4/6)

9 months ago 4 1 1 0
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"mirror" is not only expressed in this posterior region of the wing disc, but #CRISPR knockouts result in mosaics where the vannus is entirely lost or partially reduced accompanied by vein anomalies and the spread of color patterns! (3/6)

9 months ago 1 0 1 0
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The posterior part of wings in broad winged insects like butterflies has a lobe like region called “vannus” which is bordered by the anal (2A) vein. Across butterfly families, the vannus is usually characterized by distinct silver scales and devoid of color patterns like the rest of the wing. (2/6)

9 months ago 1 0 1 0