SquiDBase SquiDBase is an innovative platform designed to manage and share vast amounts of microbial paired squiggle-sequence data, enhancing the capabilities of researchers and scientists in pathogen detection...

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#Bioinformatics #Microbiology #Virology #Metagenomics #AdaptiveSampling #Epigenetics #Basecalling

While most public resources focus primarily on basecalled data, our goal is to make the underlying, information-rich signal accessible, reusable, and well annotated, enabling method development, benchmarking, and innovation in areas such as basecalling, modification detection, and adaptive sampling.

SquiDBase: a community resource of raw nanopore data from microbes Abstract. Nucleotide sequences in the FASTQ or BAM format are widely shared, yet derived from platform-specific raw data outputs that differ across sequenc

The SquiDBase paper has now been published in NAR Genomics and Bioinformatics: doi.org/10.1093/narg...

SquiDBase (squiggle database) is an open, community-driven resource for raw #nanopore sequencing signal data from #microbial and #viral origin, complemented by corresponding basecalled reads.