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Posts by Ali Oghabian

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Struggling to focus on research when the world is 'on fire'? Some ways to cope Keeping up with distressing news is impacting some researchers' mental health and their scientific work.

The deluge of disruptive news from around the globe is making it hard for researchers to focus on their day-to-day work

go.nature.com/4s5bGSc

3 weeks ago 59 26 2 8
An illustration of a cross-section of a human head superimposed on computer chip details. Image Credit: Artificial Intelligence Brain by Gerd Altmann, Pixabay

An illustration of a cross-section of a human head superimposed on computer chip details. Image Credit: Artificial Intelligence Brain by Gerd Altmann, Pixabay

Deep learning is increasingly being used in #biology, but evidence suggests that models may not be as generalizable as hoped. Thomas O'Shea-Wheller & Katie Murray @cornwall.exeter.ac.uk outline the scale and severity of the issue, suggesting potential solutions.
🧪 #AI
plos.io/40H9ogJ

1 month ago 4 4 1 0
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Today is Rare Disease Day. 🩷💚💙💜

Approximately 5% of the world's population is affected by a rare disease. #RareDiseaseDay is an important initiative for us, as nearly 90% of neuromuscular disorders are classified as rare diseases. (1/5)

@rarediseaseday.bsky.social

1 month ago 4 4 1 1

Myofin’s research aims to identify the genetic variants causing neuromuscular disorders, to understand the structure and function of muscle and their alterations in disease, and to evaluate therapeutic interventions.

1 month ago 1 2 0 0

A rare disease is a medical condition that affects fewer than 1 in 2,000 people and often entails extensive, lifelong consequences.

1 month ago 1 2 1 0
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To mark Rare Disease Day on 28 February we want to highlight the importance of Folkhälsan’s research on rare neuromuscular diseases – both for our researchers and for the people living with a rare neuromuscular condition.
@myofinlab.bsky.social

1 month ago 3 3 1 0
The transcriptomic signature of age and sex is not conserved in human primary myotubes

Transcriptome signatures linked to sex and age in human muscle tissues are not conserved in primary myotubes.
BMC #SkeletalMuscle #MuscleResearch

rdcu.be/e3tL9

2 months ago 0 0 0 0
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Swethaa from our lab, @myofinlab.bsky.social, presented on the advantages of rRNA-depleted RNA-seq over poly(A)+ selection for muscle and neuromuscular disease research at the #fiRNA #RNASalon meeting.

#MuscleResearch #RNAseq #NeuromuscularDisease

2 months ago 2 1 0 0
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AI tools boost individual scientists but could limit research as a whole Analyses of hundreds of thousands of papers in the natural sciences reveal a paradox: scientists who use AI tools produce more research but on a more confined set of topics.

AI may help scientists go deeper, though not always wider. Higher output and faster careers, possibly alongside a narrowing of scientific focus. A paradox explored in @nature.com .
nature.com/articles/d41...
#AI #MachineLearning

2 months ago 0 0 0 0
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The team behind 'The Man Who Knew Infinity' is reuniting to make a new film honouring Maryam Mirzakhani! Ken Ono and Manjul Bhargava (who collected his Fields Medal in the same year as Mirzakhani) are associate directors, Matt Brown writer/director! ❤️❤️❤️🎉 🎉 🎉
infinityfilmsmirzakhani.com

2 months ago 4 3 0 0
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NIH ends support for some human fetal-tissue research – dismaying scientists The US biomedical funding agency also hints at future restrictions on research involving human embryonic stem cells.

The NIH also hints at future restrictions on research involving human embryonic stem cells

go.nature.com/3YUZfwe

2 months ago 13 7 1 1
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A comprehensive survey of genome language models in #bioinformatics academic.oup.com/bib/article/... 🧬🖥️🧪

3 months ago 12 3 0 0

This is due to an almost complete communications blackout imposed by the Iranian government amid the recent unrest, aimed at controlling and suppressing information.

3 months ago 1 0 0 0

Colleagues/students who recently traveled to #Iran are likely unreachable by email, messaging apps, or phone. Many flights to and from #Iran are canceled. Please expect delays in both return schedules and email responses. @helsinki.fi @folkhalsanresearch.bsky.social

3 months ago 1 0 1 0
European Bioconductor Conference 2026 – EuroBioC2026 The European Bioconductor Conference (EuroBioC2026) will take place on June 3rd to 5th, 2026, in Turku, Finland EuroBioC2026 will bring together the Bioconductor community to showcase the latest cutti...

#EuroBioC2026 (i.e. The European #Bioconductor Conference) will take place, in Turku, Finland, on June 3-5, 2026. For more info see eurobioc2026.bioconductor.org. #Bioinformatics #Rprogramming

3 months ago 2 1 0 0

We certainly do 😊♥️

4 months ago 0 0 0 0
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Well I meant when they attempt to build a "gingerbread house", they deliver something superior on a different level. It was meant to be a compliment 😅

4 months ago 1 0 1 0

Ever wondered what happens when muscle research scientists attempt to build a gingerbread house? #LabLife #MuscleScience #PeerReviewPending @myofinlab.bsky.social @folkhalsanresearch.bsky.social

4 months ago 2 0 1 0
Poly(A) selection limits detection of long and alternatively spliced transcripts compared with rRNA depletion in RNA-Sequencing The eukaryotic transcriptome diversity arises largely from alternative splicing. One of the widely used high-throughput methods to study this diversity is RNA sequencing. RNA sequencing has become a c...

Our new preprint on the limitations of PolyA+ selection vs rRNA-depleted RNA-seq, especially its effects on analysis of splicing and expression of long transcripts (and on findings of diseases linked to these transcripts), is now out: doi.org/10.21203/rs.... #RNAseq #RNASplicing #Bioinformatics

4 months ago 2 0 0 0

Our new preprint on the limitations of PolyA+ selection vs rRNA-depleted RNA-seq, especially its effects on splicing and the expression of long transcripts (and diseases linked to them), is now out: doi.org/10.21203/rs....
#RNAseq #RNASplicing #Bioinformatics

4 months ago 3 0 0 0
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Happy Halloween! 🎃👻🔮 The single muscle fibres won the ”Best Group Costume” prize at @folkhalsanresearch.bsky.social 🏆

5 months ago 5 4 0 0

Check out our recap videos from #EMC2025 and #WMS2025 on our Instagram 📹 :

European Muscle Conference (www.instagram.com/reel/DPTJFxc...)

World Muscle Society Congress (www.instagram.com/reel/DQOT_LV...)

5 months ago 3 2 0 0
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‘Am I redundant?’: how AI changed my career in bioinformatics A run-in with some artefact-laden AI-generated analyses convinced Lei Zhu that machine learning wasn’t making his role irrelevant, but more important than ever.

A run-in with some artefact-laden AI-generated analyses convinced Lei Zhu that machine learning wasn’t making his role irrelevant, but more important than ever

go.nature.com/4hd7MCU

6 months ago 31 10 1 1
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A few highlights from a great week at #WMS2025 in #Vienna with the @myofinlab.bsky.social team!

6 months ago 2 1 0 0
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Heading back to Helsinki after an inspiring #WMS2025. Grateful for an excellent meeting, a beautiful host city, and the chance to connect with brilliant colleagues and scientists

6 months ago 2 0 0 0
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Great times with the Myofin team (@myofinlab.bsky.social) at #WMS2025 In Vienna !😂

6 months ago 2 2 0 0
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@jaakkosarparanta.bsky.social presenting in the poster highlights session! 👏
#WMS2025
@worldmusclesociety.org

6 months ago 3 1 0 0
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Two years from today #Helsinki and #Finlandiahall will welcome #WMS2027, the annual congress of @worldmusclesociety.org. Save the date!

6 months ago 4 3 0 0
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Interested in the regulation of RNA splicing in skeletal muscle development and function? Come by my poster (442P) this evening from 17:15 to 18:15 at #WMS2025.

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Our team is excited to connect - come find us at the @worldmusclesociety.org congress. 🇦🇹 Let’s talk science, collaboration, and future ideas! 🧬🤝💡
#WMS2025

6 months ago 3 2 0 0