Trichogramma brassicae -entomaphagous parasitoid- 235 Mbp #genome assembly 95.5% #BUSCOv3 complete, 1'572 contigs, N50 556'663 bp, 16'905 #genes www.biorxiv.org/content/10.1101/2020.04....
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#BUSCOv3
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355 Mbp plant #bug #genome assembly, 87.5% #BUSCOv3 complete, 21.9% duplicated!!, 24,688 #genes, Nesidiocoris tenuis www.biorxiv.org/content/10.1101/2020.02....
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1.15 Gbp🧬#genome assembly of brown marmorated stink bug 👃smelly #invasive #pest #insect bmcgenomics.biomedcentral.com/articles/10.1186/s12864-... @Arthropod_i5K 24'450 protein-coding #genes 98.7% #BUSCOv3 complete
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Culex tarsalis 800Mbp #genome assembly @PacBio HiFi reads from a single male & 10X linked-reads, 71.5% #BUSCOv3 complete, 15,682 protein-coding #genes www.biorxiv.org/content/10.1101/2020.02....
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680-Mbp #genome assembly 13 unique chromosomes, 95.1% #BUSCOv3 single-copy complete https://https://t.co/oZ3aHjCxJk
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#chromosome-scale #genome assembly from single fly #Drosophila 95.2% #BUSCOv3 complete https://www.biorxiv.org/content/10.1101/866988v1
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Using #BUSCOv3 to assess #insect #genomic resources: #genome #gene set, & #transcriptome assessments explained step-by-step link.springer.com/protocol/10.1007/978-1-4... #Methods & #Protocols
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GenomeQC including #BUSCOv3 a new toolkit that integrates multiple metrics to characterize both #genome assembly and #gene annotation quality https://www.biorxiv.org/content/10.1101/795237v2
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Woa, congrats and huge thanks for the Busco VM, works great and is really accessible @rmwaterhouse #buscov3. I just tried for fun and now I am hooked. Gimme moare fasta files!
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Mara Lawniczak @marakat building high quality reference #genome assemblies from single #mosquitoes #MosquitoMeeting #BUSCOv3 @PacBio
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Benchmarking Universal Single-Copy Orthologues #BUSCOv3 on MBE's most cited papers list @MBE_press @OfficialSMBE https://academic.oup.com/mbe/pages/highly_cited
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For #ArtGen19 folks asking to view #BUSCOv3 assessments of ~600 #arthropod #genomes http://wp.unil.ch/waterhouse/arthropoda-buscoed/
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New #BUSCOv3 chapter in Methods in Molecular Biology link.springer.com/protocol/10.1007/978-1-4... Benchmarking Universal Single-Copy Orthologues #genome #gene #transcriptome #genomics
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Step-by-step guide to using #BUSCOv3 to estimate completeness of (#insect) transcriptomes, #genome assemblies, and annotated #gene sets in terms of their expected gene content link.springer.com/protocol/10.1007/978-1-4...
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#Daphnia magna KIT #genome https://doi.org/10.1016/j.aquatox.2019.02.009 96.7% #BUSCOv3 complete single copy, tot. 15,721 genes - way fewer than 26,646 in D. magna xinb3, and 30,810 in D. pulex
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Step-by-step guide to using #BUSCOv3 to assess #insect #genomic resources link.springer.com/protocol/10.1007%2F978-1... Benchmarking Universal Single-Copy Orthologues to estimate completeness of transcriptomes, genome assemblies, and annotated gene sets in terms...
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10-20X WGS 🧬 coverage => hundreds to thousands of targeted loci from #BUSCOv3 sets besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210... for #phylogenomics from low‐coverage WGS
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Solitary alkali #bee 🐝 300 Mbp #genome 🧬 99% complete Insecta #BUSCOv3 #genes @GeneticsGSA G3 www.g3journal.org/content/early/2019/01/14... with @KarenKapheim @Harpur @laruzzante @EckartStolle et al.
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3 families of Coleoptera are morphologically derived click #beetles 🐞
https://www.nature.com/articles/s41598-018-35328-0 #genome Fig.2A #BUSCOv3 #genome 🧬 #gene set completeness
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Great talk @unil from @RokasLab on latest impressive work @CellCellPress tempo & mode of yeast (n=332) #genome #evolution www.sciencedirect.com/science/article/pii/S009... #phylogenomics #BUSCOv3
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#insect #genomics (Eds. Sue Brown & Mike Pfrender) out in time for #EntSoc18 methods in molecular #biology https://www.springer.com/la/book/9781493987740 cutting-edge techniques #genome assembly #annotation quality control #BUSCOv3 #GFF3toolkit methylation regulation etc....
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It makes such a difference when users reply with a thank you after you've helped them with a support request #helpdesk #OrthoDB #BUSCOv3 - yes you, much appreciated @astrid_boehne #thelittlethings
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Aphaenogaster #ant 🐜 #genomes 7 colonies of 6 species, mean assembly 370Mbp, scaffolds 47K. What about #genes? What does #BUSCOv3 completeness look like? https://www.biorxiv.org/content/early/2018/08/23/302679
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Let us know if you spot any HMMER issues with #BUSCOv3 when you update your #HMMER http://hmmer.org/download.html to version 3.2 (available since June)
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#BUSCOv3 part of #NGScloud a #bioinformatics system developed to analyze RNA-seq data using @awscloud Amazon Web Services' Elastic Compute Cloud academic.oup.com/bioinformatics/advance-a...
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Challenging 1.14 Gb assembly of horn fly #genome with 69% #BUSCOv3 complete + 9% fragmented http://www.g3journal.org/content/8/5/1675.long
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Am sad to be missing #PAGXXVI this year, for #BUSCOv3 questions find Felipe Simão: Pacific Salon 3, Sunday, Jan 14 11:30 AM, https://doi.org/10.1093/molbev/msx319 @ISBSIB @unige_en @hoffsbeefs @JChrisPires @KeywanHP @annaliese_mason @isugif @justincbagley
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Many thanks to all #BUSCOv3 users for feedback & suggestions during the update process - keep them coming for future releases! Now online at MBE @OfficialSMBE academic.oup.com/mbe/advance-article/doi/... @ISBSIB @UNIGEnews @unil #Genomics #OrthoDB...
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