Impressions from our "From Gene Models to Biological Insights - Functional Annotation" course. More details: https://www.izmb.uni-bonn.de/en/pbb/news#d2025c2

From Gene Models to Biological Insights course done! Over 20 young scientists dove into functional annotation and plant genomics with incredible energy 🌿🧬
#PlantSci #FunctionalAnnotation
www.izmb.uni-bonn.de/en/pbb/news#...
@nancy-choudhary.bsky.social @shakunthalan.bsky.social @bpucker.bsky.social

PlantCAD2: A Long-Context DNA Language Model for Cross-Species Functional Annotation in Angiosperms Understanding how DNA sequence encodes biological function remains a fundamental challenge in biology. Flowering plants (angiosperms), the dominant terrestrial clade, exhibit maximal biochemical compl...

PlantCAD2: A Long-Context DNA Language Model for Cross-Species Functional Annotation in Angiosperms
doi.org/10.1101/2025...

KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...

#Bioinformatics #Genomics #FunctionalAnnotation

VarOmeter leverages comprehensive genomic data and semantic context to prioritize causal genes and uncover regulatory mechanisms underlying complex traits.

#Genomics #Bioinformatics #FunctionalAnnotation #Research

PubMind: Literature-Based Genetic Variant Extraction and Functional Annotation Using Large Language Models. #LLM #LiteratureGeneticVariants #LiteratureDataExtraction #FunctionalAnnotation #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...

DeepAnnotation: A novel interpretable deep learning–based genomic selection model that integrates comprehensive functional annotations. #DeepLearning #FunctionalAnnotation @gigascience.bsky.social
academic.oup.com/gigascience/...

Functional Annotation – How to Tackle the Bottleneck in Plant Genomics
www.preprints.org/manuscript/2...

#Genomics #Bioinformatics #FunctionalAnnotation #PlantSci #BigData #DataScience

ProtPhage: a deep learning framework for phage viral protein identification and functional annotation. #PhageProteins #FunctionalAnnotation #DeepLearning #Phages #Bioinformatics 🧬 🖥️
academic.oup.com/bib/article/...

Genome mining the black-yeast Aureobasidium pullulans NRRL 62031 for biotechnological traits Aureobasidium pullulans is a yeast-like fungus known for its commercial biomanufacturing of pullulan. This study explores the genome of A. pullulans NRRL 62031, highlighting its biosynthetic potential...

Genome mining the black-yeast Aureobasidium pullulans NRRL 62031 for biotechnological traits

#fungifriends
#Aureobasidium
#Whole-genomesequence
#Phylogeny
#Functionalannotation
#geneclusters

pmc.ncbi.nlm.nih.gov/articles/PMC...