#ggtree by @yulab.bsky.social is fantastic for visualizing #phylo data in @rconsortium.bsky.social as it’s mounted on the @posit.co tidyverse. These are some phylopic.org homework plots from the #sistematicaunam class at @ib_unam real purdy ain’t ‘em?

Here is a short example of how to create a phylogenetic tree like the one on the left. I use data and silhouettes provided by the ggtree package — more is coming in the next days!
#ggtree #rstats #phylogenetics #dataviz #bioinformatics #ggplot2 #PhyloPic code: gist.github.com/loukesio/dd3...

thats a very interesting phylogenetic tree that reflect the avian evolution. I know its a big jump, but can we build something like this with #ggtree ?
www.nature.com/articles/s41...

Styling ggtree branches is easy; change color, linewidth, and linetype directly inside the ggtree() call. Works the same across rectangular, circular, and slanted layouts. Colors from the alger palette (ltc package).
#ggtree #rstats #phylogenetics #dataviz

thank you Trevor 😀!
More stuff related to #ggtree are coming

The cool things about ggtree don't stop here. You can use geom_text() or geom_label() to display node and tip labels simultaneously, or geom_tiplab() to show only tip labels. You can even have nodes and tips looking differently
#ggtree #rstats #phylogenetics #dataviz #bioinformatics #ggplot2

#ggtree has a relatively steep learning curve. But after looking at a few Python alternatives eg., toytree, ETE, Bio.Phylo it's hard to match its layout versatility. 21 tree variants with just a few lines of code.
#rstats #phylogenetics #bioinformatics

Plotting phylogenetic trees in R: alternating clade highlights A guide to highlighting clades in phylogenetic trees in R

💬 "There’s already plenty of documentation out there for how to use #ggtree, but there is the odd thing I come up against that I haven’t seen explicitly demonstrated before." - @rowenahill.bsky.social.

A guide to plotting #phylogenetictrees in #R, and automating clade highlights
buff.ly/Vd5b61a

🧬💻

Plotting phylogenetic trees in R: alternating clade highlights A guide to highlighting clades in phylogenetic trees in R

💬 "There’s already plenty of documentation out there for how to use #ggtree, but there is the odd thing I come up against that I haven’t seen explicitly demonstrated before."

A guide to plotting #phylogenetictrees in #R, and automating clade highlights, by @rowenahill.bsky.social 👇

Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree The treeio and ggtree packages provide robust tools for the comprehensive parsing and visualization of phylogenetic placement data. These tools enable detailed analyses, including placement filtratio...

Scalable method for exploring #phylogenetic placement uncertainty with custom #visualizations using #treeio and #ggtree onlinelibrary.wiley.com/doi/full/10....
#ggplot2 #R #Rstudio #Bioinformatics