I learn, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.
That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit […]
ReadTheDocs page about provenance and RO-Crate in Autosubmit, with the RO-Crate profiles used.
Autosubmit now conforming to RO-Crate profiles Process Run Crate 0.5, Workflow Run Crate 0.5, and Workflow RO-Crate 1.0 🎉 autosubmit.readthedocs.io/en/master/us... #provenance #metadata #rocrate
"What's new: FAIR data management use case, R package, Profile Crate tool" www.researchobject.org/ro-crate/blo... #metadata #fair #rocrate #research #opensource
RO-Crate
RO-Crate preview
Specification for RO-Crate 1.2 released
galaxyproject.org/news/2025-06-04-ro-crate...
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #rocrate #fair #research_data #research #data
> Your abstract 'Live Demo: From Snakemake Run to Scholarly Record - Automatic Nanopublications & Workflow Run RO‑Crate Generation' has been successfully submitted. It is registered with the number #150. You will be notified by email with the submission details.
I have quite some work to do […]
From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025
www.researchobject.org/ro-crate/blog/2025-10-09...
#OpenScience #ReproducibleResearch #GalaxyProject #ROCrate #WorkflowHub #Bioinformatics #FAIRData #ResearchTools (1/2)
Describo UI
Describo UI
NovaCrate UI
NovaCrate UI
Visualizing an RO-Crate archive with Describo and NovaCrate #OpenSource #Provenance #Metadata #rocrate #graph #UI #dataviz #workflows #sciworkflows
New Autosubmit workflow with RO-Crate published on WorkflowHub by Pablo Goitia: “EC-Earth3 workflow with wrappers in MareNostrum 4” workflowhub.eu/workflows/1733 #opensource #autosubmit #workflow #sciworkflow #python #rocrate #ecearth
Book cover of "FAIR Research Objects and Computational Workflows - A Linked Data approach" by Stian Soiland-Reyes.
"FAIR Research Objects and Computational Workflows - A Linked Data approach" by Stian Soiland-Reyes. A must-have book for anyone working with Workflows, FAIR, Reproducibility, Linked Data, and Semantic Web (and more!). #sciworkflows #books #fair #reproducibility #workflows #rocrate
"FAIR Digital Objects in Autosubmit Workflows" www.tib-op.org/ojs/index.ph... #opensource #fair #workflows #sciworkflows #climate #fdo #rocrate #autosubmit
Tools for Using RO-Crate Research Data: an ARDC Community Data Lab co-design workshop
📆 Tues 18 March 12 noon AEDT, online
✍️Learn more and register ardc.edu.au/event/ardc-c...
w/ @mdap-unimelb.bsky.social @humanitiesau.bsky.social
#ROcrate
New paper out in Nature Scientific Data: “Applying the FAIR Principles to computational workflows”, Wilkinson, S.R., Aloqalaa, M., Belhajjame, K. et al., 2025 (open access): www.nature.com/articles/s41... #workflows #sciworkflows #fair #fairness #rocrate #reproducibility #fdo #provenance
I've open sourced RdfCrate, a Python library I've been using to generate RO-Crates for research metadata.
It was motivated by finding that RDF triples are easier to work with than JSON-LD, and that rdflib is a brilliant foundation to build on top of.
github.com/WEHI-SODA-Hu...
#rocrate #rdf #rdm