Posts by Iddo Friedberg ๐ด ืขืืื
The awesome virome logo of a phage above a strand of DNA
Have you developed a new #bioinformatics tool to understand #phage or #virus? Make sure you add it to #awesome-virome
github.com/shandley/awe...
ืื ืืืื ื"ื ืืืืขื ืืจืื, ืืื ืืืืขื ืืืืข ืืืืืช ืืืืงืืืจื ื ืืืืช ืืคื ืืืืืช ืืืืงืจ ืฉื ืืกืืืื ื/ืืช. ืื ืืชืืจื ื ืืื ืืคื ืืืืืช ืืืืืช ืืืืจื ืืืงืจ ืืงืืจืืื. ืื ืงืืจืก ืืขืืจ ืืงืืจืกื ืืืฉืจื ืืกืืกืืื ืืืืื ืืื ืฉืืื ื ืืืงืจื. ืืืืืจื ืืืืืื ืืื ืืืขืืื.
ืื ืืกืฃ, ืืจืื ืชืืื ืืืช ืืืงืืืจื ืืืจื"ื ืื ืืงืืื ืกืืืื ืืื ืืืื ืืืจืกืืืืืช ืืจืืช ืื"ื ืื ืกืืืื ืชืืืจ ืฉื ื.
Want to annotate a bacterial genome with structures?
@oschwengers.bsky.social bakta and @gbouras13.bsky.social phold got together, and the result is Baktfold: protein annotation across the microbial tree of life using structures
www.biorxiv.org/content/10.6...
#phagesky #microsky #microbiomesky
A thick and thin Lego brick. The thick has a titke LEGO, the thin has a title "kosher for Passover LEGO"
ืื ืฉืื!
Small social media image with the following text: 17 May 2026 | Vilnius, Lithuania + online Virus Bioinformatics + nf-core Hybrid Collaborative Hackathon Calling all collaborative hackers! Propose a project (with QR code) Registration opens April 2026 Supported by the NFDI4Micorbiota, nf-core, and VirJenDB A satellite event of EBVC ViBioM 2026
X-post from Bluesky:
๐งโ๐ปSatellite Hackathon at #ViBioM2026!
Join the #Virus #Bioinformatics + @nf_core Hybrid Collaborative #Hackathon & collaborate on bioinformatic tools and ideas & contribute to reproducible workflows & research infrastructure.
Want to [โฆ]
[Original post on genomic.social]
That's relatively new...
Write a horror story using only 3 words.
Large language models
Moonrise Kingdom
ืืื ืืืื
A universe is which this is not a parody has no reason to exist.
How Not to be Seen: Predicting Unseen Enzyme Functions using Contrastive Learning www.biorxiv.org/content/10.64898/2026.02...
Call for the first 2026 round of the OBF Event Fellowship & overview of the overall round of 2025
www.open-bio.org/2026/03/05/e...
"This phosphodiesterase from E. coli has presented us with a poser. We do not know which node on the EC tree it is on. But we will soon find out."
How Not to be Seen: Predicting Unseen Enzyme Functions using Contrastive Learning
www.biorxiv.org/content/10.6...
I love curling.
curl -X POST -L -H "Content-Type: application/json" -H "Authorization: Bearer <token>" -d '{"key":"value"}' api.example.com/data -o response.json --verbose
As a large language model, I recommend that you resist the temptation to open your response with โas a large language modelโฆโ in the rebuttal.
LAN relationship
The AI of wordle as a grant reviewer:
"This proposal isnโt one of the projects I think will be funded based on what Iโve learned from doing science".
New @kaggle.com competition, which I am happy to co-host Can you extract the metadata of mass-spec experiments from scientific papers? Thanks to the NSF National Synthesis Center for Emergence in the Molecular and Cellular Sciences (NCEMS) for sponsoring. www.kaggle.com/competitions...
Philip Marlowe paying the fare to lady taxi driver: "Here toots, buy yourself a cigar'"
TD: If you can use me again sometime, call this number.
PM: Day and night?
TD: Night's better. I work during the day.
The Big Sleep 1946
very sad news. Peer Bork was one of the leaders of our field, a wonderful scientist, and he's much too young to be gone. www.embl.org/news/embl-an...
If you used to do this *blurry logo of Windows 11* And now you do this instead: *clear as heck picture of Tux, the mascot of Linux* You are making PROGRESS. (in green)
You made the right choice by opting for Linux and I am proud of you for that. ๐ฅน
"Academic politics is the most vicious and bitter form of politics, because the stakes are so low."
en.wikipedia.org/wiki/Sayre%2...
Close your eyes
Have no fear
Third reviewer's gone
He's on the run and your daddy's her
We are deeply saddened to share the passing of Amos Bairoch, pioneer of bioinformatics and co-founder of SIB. His lifelong commitment for high-quality, open data transformed global research. We honour his legacy by continuing to build the future of bioinformatics.
ืืืืช ืื ืืืืืืช | ืกืืืืจืชื ืืึผืึถืจื'ื - ืขื ืขืืื www.am-oved.co.il/%D7%9E%D7%9C...
Welcome! Definitely not too late!