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Posts by Kateryna Shkarina

Don't be shy to take on a little two-week side project. These five months will be the most precious three years of your academic journey.

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Transfer to a naturalistic setting restructures fear responses in laboratory mice Zipple et al. show that transferring laboratory mice to naturalistic outdoor enclosures prevents and even reverses a canonical anxiety phenotype in rodents. The findings underscore the value of studyi...

"Although animals in natural environments accumulate a wide range of experiences that allow them to calibrate threat assessment, most behavioral studies of anxiety rely on laboratory animals housed in static, impoverished conditions."
🔥
www.cell.com/current-biol...

3 days ago 18 6 0 0

ICYMI: a quick calculation of transmembrane domain-containing proteins in a proteome.

If you need to use this info: the code is in the post, or you can cite it since all quantixed posts have their own DOI courtesy of Rogue Scholar. doi.org/10.59350/0ah...

4 days ago 4 3 0 0

I'm looking for #NewPIs (<3 years as lab heads) in the gene regulation/functional genomics space. If you are one or know one, please comment below! 🧪

4 days ago 11 25 12 0

www.nature.com/articles/d41...? A researcher at Gothenburg U made up a skin problem caused by too much screentime, and uploaded a popular science piece and "preprints" online. Soon, LLMs would treat the condition as real, and the fake study cited in real medical papers.

1 week ago 8 7 2 1

The beauty and value of studying non-model organisms:

1 week ago 1 0 0 0
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Open Positions -

Open postdoc position in my lab on HGT and interbacterial competition. We seek candidates with a PhD in microbiology (or related fields)+ strong 1st-author publications.
Curious, highly motivated, and dedicated team players ready to contribute fully are encouraged to apply. Details: tiny.cc/cz01101

3 weeks ago 49 60 0 2

If we want to understand and treat human diseases, we need to have better and human-specific models. Many excellent talks and posters today at #BonnOrganiodSymposium2026 highlight new directions in #organoid, ex vivo tissue models and #organ-on-chip development and application:

1 month ago 4 0 0 1
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Clinical development of cancer vaccines - Nature Medicine This Review highlights insights from recent clinical trials and discusses critical factors for optimizing cancer vaccines, with a focus on proxies for vaccine efficacy, neoantigen selection, modular p...

Want to know how cancer vaccines can keep you alive?
Very pleased to join several luminaries in the field to offer a comprehensive review on this important topic.
@harvardmed.bsky.social @bostonchildrens.bsky.social #cancer #vaccine
www.nature.com/articles/s41...

1 month ago 10 5 0 0
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We’re happy to share our updated manuscript on Ninj1, incorporating measurements of membrane tension, cellular assays of ninj1 and ninj2 dimer stability and MD simulations of ninj1 oligmers opening and forming (see below!). @biorxivpreprint.bsky.social

www.biorxiv.org/content/10.1...

1 month ago 19 10 1 0
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Sunday read:
An excellent review from my friend and virology expert Jen Wuerth and @fischmidtlab.bsky.social on everything you want to know about inflammasomes in antiviral immunity, and how to find them: www.mdpi.com/1999-4915/18...

1 month ago 4 1 1 0

I can only recommend...

1 month ago 4 3 1 0

When someone says „Scientists do not want you to know“ you can dismiss everything from there on. Scientists want you to know. They are desperate that you know. They can’t shut up about what they found out and want you to know.

1 month ago 9597 4126 76 162
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Functional nutrient-genetic profiling reveals biotin and FBXW7 are essential to bypass glutamine addiction Lisci et al. present a unified model revealing how cells escape glutamine addiction, a metabolic vulnerability of several cancers. Combining systematic genetic and nutrient screens, they show that bio...

Our story on #FBXW7 and #biotin in #glutamine_addiction is now peer-reviewed and published in Molecular Cell! Heroic work led by the very first postdoc of the lab @miriamlisci.bsky.social. Have a look!

www.cell.com/molecular-ce...

1 month ago 23 11 0 2
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You are interested in immunology and how nucleic acid structures contribute to their function and how this impacts disease development - Rayk Behrendt and myself have open PhD positions for a joint PhD program between Bonn and Osaka.

1 month ago 4 5 0 0
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Caspase-4 binds to LPS membranes with positive curvature for non-canonical inflammasome activation The non-canonical inflammasome, comprising caspase-4 in humans, initiates pyroptosis upon sensing cytosolic lipopolysaccharide (LPS) from Gram-negativ…

We're thrilled to share the lab's latest publication demonstrating how caspase-4 and the non canonical inflammasome recognize cytosolic LPS by preferentially binding to the convex portions of membranes - both bacterial and micelles @cp-immunity.bsky.social
www.sciencedirect.com/science/arti...

2 months ago 23 11 1 1

Scientist's way of saying 'I ❤️ you'

"I found this paper/preprint that made me think of your project."
"I checked the mice/cells/plates already."
"I just sent you the edits you requested."
"I have a slide/diagram that will work for that."
"I had that problem with [lab equipment], I have a fix."

2 months ago 123 30 2 1
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Preprint: fever is beneficial for antimicrobial defence by raising AMP activity towards bacteria while reducing mitochondrial damage when pathogens are absent
www.researchsquare.com/article/rs-8... @ucirvine.bsky.social

2 months ago 4 1 1 0
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On the balance of knowledge - Nature Reviews Immunology Ruslan Medzhitov shares his thoughts on the balance between generating data and developing theories in immunology, with a focus on exploring the rules that govern complex systems.

Too much data, too little thinking.
A important essay from Ruslan Medzhitov on the importance of understanding data, not just generating it. A must read.
@Yale
www.nature.com/articles/s41...

2 months ago 73 27 2 3
Postdoctoral Fellow - Cellular signalling and cytoskeletal function lab

2nd postdoc job alert in the Crick Institute in London. Project will examine the role of motors & the cytoskeleton (actin, septins and microtubules) during vaccinia virus egress using biochemical, structural & cellular approaches + live cell imaging. spread the word.
crick.ac.uk/WayPostdoc20...

2 months ago 30 40 0 1

Does anyone have any experience with the Navinci Diagnostics Naveni PLA kits, especially in comparison with Duolink PLA reagents? I would extremely appreciate any information and feedback regarding the sensitivity and specificity

2 months ago 1 0 0 0
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Recruitment for the EMBL International PhD Programme is officially open! 🔊

At EMBL, we train young scientists to become skilled and creative future leaders in academia, industry and other sectors. Start your career in the life sciences with us!

🔎 Read more here:
tinyurl.com/4jdt2ra5

2 months ago 23 33 1 1

Methods should be used as widely as possible, so here is our detailed lipid imaging protocol, written with @martinba99.bsky.social and Chia-Yi (Christine) Chou authors.elsevier.com/a/1mU4XHRzCb... in Methods in Enzymology. Everything you need to know to do it yourself is in there -

2 months ago 11 9 1 0

I’m stoked to share my postdoc work with @sunnyshinlab.bsky.social, a collaborative effort with @metabailism.bsky.social & Brian Goldspiel, aided by many valued collaborators: Environmental Amino Acid Sensing Regulates the Rate of ASC Translation and NLRP3 Inflammasome Assembly. Some big takeaways:

3 months ago 24 11 1 3
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Poxvirus dsDNA genomes differentially activate AIM2 or NLRP3 inflammasomes in human primary cells - The EMBO Journal The innate immune system is known for its ability to recognize cytosolic DNA as evidence of infection, but detailed studies of this process have been mostly limited to mice and cell lines. To investig...

Ever wondered how you can specifically inhibit #AIM2 #inflammasomes? @y-m-tesfamariam.bsky.social generated inhibitory AIM2 #nanobodies to ‬dissect inflammasome responses to #poxvirus infections in human #PrimaryCells
@unibonn.bsky.social @immunosens.bsky.social link.springer.com/article/10.1...

3 months ago 15 6 1 0
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If you are looking to build your lab, take a listen to these interviews on @lonelypipette.bsky.social!

www.buzzsprout.com/1356877/epis...

3 months ago 23 9 0 0
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Hi Bluesky! I’m a molecular virologist studying how innate immune defences restrict cross-species transmission and shape disease severity.

I just joined, so reposts appreciated to help me reconnect with virology, immunology, and host–pathogen interaction folks.

(whiteboard art from Zhuonan Li)

4 months ago 20 12 3 0

We know that diet and lifestyle are strong modulators of inflammatory response, but the exact mechanisms are still elusive. Now the study below adds a piece to this puzzle:

3 months ago 1 0 0 0

Thanks a lot, good to know about your experience with ABclonal!

3 months ago 1 0 3 0

10 days left to apply! 👇

3 months ago 4 2 0 0