π¦ We just released a new major version (3.0.0) of our R package {etn}. Use it to query animal tracking data from the @aquatictracking.bsky.social database.
βοΈβπ₯ Previous versions were restricted to use on an RStudio server. You can now use {etn} from anywhere! #rstats
π oscibio.inbo.be/blog/etn-3-0-0
Posts by Peter Desmet
Have (tabular) datasets to describe? Or standards to maintain?
Data Package can help! π
I presented an introduction to this generic, simple, open and extensible standard at #LivingData2025.
speakerdeck.com/peterdesmet/...
@okfn.bsky.social @tdwg.org @gbif.org @obis.org @geobon.org
Are animals randomly distributed in the air, or is there a structure to where and when we find them? In our new paper we outline factors that shape habitat use in the air, from abiotic structure to biotic interactions. A lot of fun discussions behind this one! π¦
π¦π¦π¬
www.cell.com/trends/ecolo...
"Bright, big-brained birds boldly breaking boundaries" ππ
This excellent title and more in @gbif.org's latest report on how GBIF data are used for research: www.gbif.org/science-review
π¦ We just released a new version (0.4.0) of our R package movepub.
π This release improves the conversion of animal tracking data to Darwin Core and EML, making it easier to publish this type of data to @gbif.org and @obis.org.
π oscibio.inbo.be/blog/movepub...
#rstats #biologging
If it becomes the authoritative one, even better, because through Checklistbank it could then become a/the source on birds for Catalogue of Life. β
I donβt have an answer to that, but seems like a good question to ask at on of the @wildlabs.bsky.social forums.
π¦ We just released a new version (0.4.0) of our R package camtrapdp.
π This release includes lots of new functionality, such as merging and writing Camera Trap Data Packages, updating taxa or rounding coordinates, and conversion to EML.
π oscibio.inbo.be/blog/camtrap...
#rstats #cameratrapping
Congrats! π¦ Looks like a perfect candidate to submit to Checklistbank to increase discoverability and reuse. Can be done through @GBIF.org, see www.checklistbank.org/about/contri...
Join us today at 16:00 CEST for a @wildlabs.bsky.social webinar! We'll be discussing an exchange standard for bioacoustic data. Register here: wildlabs.net/event/standa...
With @peterdesmet.com, @bencretois.bsky.social and Julia Wiel
Cool! Is these monitoring data that will go into the European Seabirds at Sea database? esas.ices.dk
π’ B-Cubed has launched its revamped Guides and Tutorials platform, offering a clearer structure and improved usability for #biodiversitydata users. Access step-by-step guidance on tools, workflows, and policy support βοΈ
π¦ Explore the updated platform: b-cubed.eu/news/b-cubed...
@gbif.org @ipbes.net
π Mark your calendar for the upcoming practical training session on 14 May hosted by @gbif.org π
#DataOccurrenceCubes #DataCubes #BiodiversityData #DataUseClub @inbo.be
An outcome of years of collaboration among ecologists, meteorologists and open science developers, working together to support a broader research community #ornithology and radar aeroecology. Supported by eCOST, @biodiversaplus.bsky.social and more.
Paper: www.nature.com/articles/s41...
We're working on a common standard for Passive Acoustic Monitoring (PAM) data! π‘ποΈ Hopefully this will boost data sharing, FAIR access & large-scale studies. π§ͺ Read about our proposed standard & join our May webinar via @wildlabs.bsky.social
More: wildlabs.net/discussion/s...
π’ News from our @b-cubed.eu consortium includes the launch of a simple, easy-to-use service for creating & downloading #species #occurrence cubes based on @gbif.org!
πΉ Hear more about it from @cabbageleek.bsky.social (Meise Botanic Garden) and Andrew Rodrigues ( @gbif.org) in this short video:
green graphic with various biological drawings
π₯ Better than the original: New SQL-based service enables download of occurrence data cube
GBIF has enabled an easy-to-use service for creating and downloading species occurrence cubes based on GBIF-mediated data.
Collaborators: @b-cubed.eu led by @inbo.be
gbif.link/data-cubes
ππΎ Next week we'll be discussing the future of #FrictionlessData from the perspective of #TheTechWeWant initiative β @okfn.bsky.social's ambitious effort to reimagine how technology is built and used.
ππΎ Check the programme and register now: buff.ly/BqZQgyF
#DataPackage
#OpenData
Weather radars continuously register the movements of billions of animals in the air! We have now published datasets covering large parts of Europe, providing an overview of the aerial habitat in a way no other method can.
Data is available on Alofdata.eu , see our blogpost:
go.nature.com/3F0wQ0L
Like two peas in a pod - The Legume Data Portal π€GBIF
This portal is a one-stop-shop for sharing information on legumes, updates on the taxonomy of Leguminosae (ChecklistBank updates), and communications via their newsletter - BeanBag.
π www.legumedata.org/ #HostedPortal
Current one, 4 or 1 (not 3). π‘οΈ
We create #opensource code, but what is its impact?
Luckily, RaphaΓ«l Nussbaumer wrote a blog post describing how he used our software to build a data standard for #geolocator data: oscibio.inbo.be/blog/geoloca... Couldn't be more proud! π₯Ή
Come do some exciting migratory insect and bird research with us! - Two more weeks until application deadline.
#entomology #radar #ornithology #phenology #ecology
I released a new version of β¨Petridishβ¨, the free Jekyll theme for research project websites. π§«
It removes the Twitter feed from the homepage, allows you to add Bluesky and LinkedIn to socials and uses the latest version of Font Awesome. For all updates, see github.com/peterdesmet/...
π His βWhy am I soft in the middle now?β seems to indicate heβs not very thrilled about it. (I am)
Fig 2 from Davidson et al. outlining proposed set of standards for bio-logging data.
New Perspective:
Establishing bio-logging data collections as dynamic archives of animal life on Earth rdcu.be/d5ril
Davidson et al discuss the importance of standardization, long-term archiving and sharing of bio-logging data, and outline a roadmap to achieve these goals.
Is there a bias towards genera that start with A? π