Juan Henao has published a post on the #tidyomics blog introducing *omicslog*, which tracks and stores data manipulation directly from tidy R (and base R) workflows, in the data object itself!
Inspired by `tidylog`.
Feedback welcome!
@bioconductor.bsky.social
Reproducibility is key to science. In computational biology, we routinely manipulate high-dimensional data (spatial, single-cell, bulk) through filtering, normalisation and transformation. Capturing those steps clearly improves reproducibility and transparency.
tidyomics.github.io/tidyomicsBlo...
A great last #tidyomics meeting of the year, looking forward to more of these in 2026!
@bioconductor.bsky.social
The last #tidyomics meeting of the year is in 2 days. Everyone welcome!
- 16 Dec, 3:30 pm (EST; New York)
- 16 Dec, 9:30 pm (CET; Berlin)
- 17 Dec, 7:30 am (AEDT; Melbourne)
We will chat about plans for next year.
Zoom link: shorturl.at/Epbbc
@mikelove.bsky.social @bioconductor.bsky.social
It's official! The #tidyomics blog is up! 🚀
Here, the introductory post
tidyomics.github.io/tidyomicsBlo...
This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.
Plz share! 🙏
@bioconductor.bsky.social #rstats
Amazing event! It is good to see the Adelaide community coming together!
#ABACBS2025
Well done, William Hutchison! For an amazing talk about prostate cancer tumour microenvironment at #ABACBS2025
Also, well done on a great workshop on #tidyomics and his #tidySpatialExperiment
@bioconductor.bsky.social
@bioconductor.bsky.social
The Euro Bioc 2026 in Turku is official!
The first conference for our Lab! Amazing environment at #ABACBS2025! 🙏
Congrats, Mengyuan, Chen and Galen, for the great posters, and Haroon for being a finalist with his talk on the democratisation of foundational models. 🚀
Registrations for the @abacbs.bsky.social and @bioconductor.bsky.social #BiocAsia workshops close TOMORROW at 5PM!
Don't miss the opportunity to learn the new trends in computational biology!
ABACBS/BioC Asia 2025 Workshops are coming! @ Adelaide 27-28 November.
Join us in November for two days of deep-dive sessions on scalable bioinformatics, spatial omics, AI-driven genomics, and more
blackochrelabs.au/abacbs2025_w...
#Bioinformatics @abacbs.bsky.social @bioconductor.bsky.social
🚀 Curious about #SpatialOmics? Want to master spatial omics data analysis using #Rstats and @bioconductor.bsky.social ?
🔥 Registrations are now OPEN for the 3rd edition of our hands-on course with @stemang.bsky.social !
📅 Save the dates: 18–20 May 2026
www.physalia-courses.org/courses-work...
Join us for another tidyomics meeting tomorrow!
We will chat about several news
- tidyprint
- tidybulk V2
- omicslog
- and more!
Join us for an interesting discussion on using AI with foundational models in biology!
Join #AI and #Immunology!
📢 Fully funded #PhD @saigenci.bsky.social: develop AI to chart immune diversity across the population, in #cancer.
CV, transcript, and a one-page statement by 30 August 2025 → www.linkedin.com/feed/update/...
#PhDOpportunity #MachineLearning #SingleCell
Two days to apply for a BiocAsia workshop!
- Did you develop a package you want to showcase?
- You want to share an analysis workflow for your favourite data type?
This is your time to share this with the community!
Submission -> biocasia2025.bioconductor.org
@bioconductor.bsky.social
BiocAsia will collaborate with ABACBS for the 2025 conference (Adelaide) to bring you a full day of workshops!
Have you thought about teaching a workshop about your or someone else's package or a workflow?
This is the time! Submit your proposal by the 1st of August.
Vince Carey opening GBCC2025 with a slide highlighting Bioconductor’s technical and community advances.
Charlotte Soneson delivering her keynote titled “From classes to community: how Bioconductor has advanced my research.”
Slide showing GBCC2025 sponsors and supporters - CZI, Limagrain, GalaxyWorks, Bristol Myers Squibb, R Consortium, Gigascience, ELIXIR, NHGRI
Large group photo of GBCC2025 attendees outdoors at Cold Spring Harbor Laboratory, smiling and gathered on the steps.
Big thanks to everyone who made #GBCC2025 a fantastic week of science, collaboration, and community!
Highlights for Bioconductor included keynotes, hands-on projects, and great conversations 💻🧬
@galaxyproject.bsky.social @bioconductor.bsky.social
What a cover! Looking forward to sharing our work with you!
Today, I had a blast at the @mig-unimelb.bsky.social
MIG symposium, showcasing our use of mixed linear models at scale and #AI tools to study #singlecell cancer immunology.
Thanks Heejung, Kim-Anh and all the MIG!
events.unimelb.edu.au/MIG/event/45...
Thanks @physaliacourses.bsky.social, it was a blast! And the great active audience made it so enjoyable!
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
🚀 Interested Spatial Omics with R/Bioconductor?
🧨Do you want to learn how to analyse these data in R with the #tidyverse?
Join us in May for this course with @stemang.bsky.social & @lgmartelotto.bsky.social
🔗 www.physalia-courses.org/courses-work...
#SpatialOmics #Bioinformatics #RStats
True 5PM. Sorry for that.
@bioconductor.bsky.social @mikelove.bsky.social
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!