Juan Henao has published a post on the #tidyomics blog introducing *omicslog*, which tracks and stores data manipulation directly from tidy R (and base R) workflows, in the data object itself!
Inspired by `tidylog`.
Feedback welcome!
@bioconductor.bsky.social
A great last #tidyomics meeting of the year, looking forward to more of these in 2026!
@bioconductor.bsky.social
The last #tidyomics meeting of the year is in 2 days. Everyone welcome!
- 16 Dec, 3:30 pm (EST; New York)
- 16 Dec, 9:30 pm (CET; Berlin)
- 17 Dec, 7:30 am (AEDT; Melbourne)
We will chat about plans for next year.
Zoom link: shorturl.at/Epbbc
@mikelove.bsky.social @bioconductor.bsky.social
It's official! The #tidyomics blog is up! 🚀
Here, the introductory post
tidyomics.github.io/tidyomicsBlo...
This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.
Plz share! 🙏
@bioconductor.bsky.social #rstats
Well done, William Hutchison! For an amazing talk about prostate cancer tumour microenvironment at #ABACBS2025
Also, well done on a great workshop on #tidyomics and his #tidySpatialExperiment
@bioconductor.bsky.social
Meeting agenda Sep 10, 2025 Attendees: Links: Agenda (feel free to add your items): • Blog almost ready for R blogger linkage thanks to @Izabela Mamede, @Mengyuan Shen and @Maria Doyle • New posts from many including @Juan Henao and myself • Ideas for other posts? • There is tidybulk v2 ready to be submitted. Some feedback would be nice there. • Stefano's new speedy code in tidySE • https://github.com/tidyomics/ genomics-todos/issues/19#is suecomment-3239791713 • https://github.com/tidyomics/t idySummarizedExperiment/i ssues/106 • Report back from tidyomics workshop at useR! (Justin and Mike) • Other projects in the works? • Ideas for engaging new users? New developers?
These are the corresponding times for your meeting: Location Local Time Durham (USA - North Carolina) Wednesday, September 10, 2025 at 6:00:00 am Adelaide (Australia - South Australia) Wednesday, September 10, 2025 at 7:30:00 pm Paris (France - Paris) | Wednesday, September 10, 2025 at 12:00:00 noon Corresponding UTC (GMT) Wednesday, September 10, 2025 at 10:00:00
Our first Fall #tidyomics meeting will be this Wed 10 September, early in US / noon in Europe / late in Australia. Feel free to join if you're interested in what we are doing to make omics data more amenable to tidy data analysis.
Organized with Stefano @stemang.bsky.social
Amazing crew! Tomorrow, we will show the Physalia crew how to use #tidyomics to manipulate and analyse spatial data!
In few hours we have the second #tidyomics meeting! where we will talk about workshops, communication and education and more.
Thursday March 27 with a Europe friendly meeting time (12:00 CET)
Join the @bioconductor.bsky.social slack channel to know more #tidiness_in_bioc channel
Join us
We encourage diverse participation regardless of background, gender, or beliefs.
The meetings are friendly and open!
You don't need to participate actively; you can join simply to stay updated on #tidyomics development.
We welcome you!
Great first #tidyomics meeting, covering 3 continents! 🌍
We discussed data representation with #tidyprint. Stay tuned for the next one to discuss workshop delivery, education and more!
Join the slack channel #tidiness_in_bioc community-bioc.slack.com/archives/CEQ...
@bioconductor.bsky.social
Tomorrow, we will have our first #tidyomics meeting for 2025! We will discuss how to centralise tidy display for biological data -> github.com/tidyomics/ti...
Wednesday 12th of March
- 4PM NY
- 9PM London
- 8AM (Thursday) Melbourne
details -> community-bioc.slack.com/archives/CEQ...
Pls share!
📅 Tidyomics next meeting is Wed, Mar 12 at 4PM NY / 9PM London / 8AM (Thurs) Melbourne. They'll discuss enhancing SummarizedExperiment display & seek feedback on tidyprint package. See Bioconductor Slack #tidiness-in-bioc channel or events calendar for more info: buff.ly/rdhL3jL
#Tidyomics #RStats
Would you open your paper to a modular open-collaboration model?
It was game-changing for #tidyomics
If you love #crowdResearch and #CommunityBuilding have your say on the #crowdToPaper model guidelines
Comment on the shared doc: docs.google.com/document/d/1...
Please share 🙏
Hello Community! Don't miss the #tidyomics meeting in one week! All welcome! plz share 🙏
We'll present #HPCell, a pipe-to-HPC 📦 for popular single-cell and spatial tools.
+ we'll discuss ecosystem and community!
8.30AM (New York)
1.30PM (London)
10.30PM (Sydney)
Great 2nd #tidyomics meeting!
Next week @carroll_jono presents #DFplyr, and we'll chat community and ecosystem!
This will be US, AU friendly (we will rotate)
- 9AM Sydney (wed)
- 4PM San Franc. US (tue)
- 7PM NY (tue)
unimelb.zoom.us/j/8833403951... Pswrd:542990
@mikelove.bsky.social
Don't miss the #tidyomics meeting tomorrow!
(Tuesday, details below)
@JacquesSerizay will present #tidyCoverage + we'll discuss how to improve the ecosystem and community!
8.30AM US (New York)
1.30PM EU (London)
10.30PM AU (Sydney)
www.bioconductor.org/packages/rel...
🧹🧬💻Exciting first #tidyomics @bioconductor meeting!
We talked about community, development plans, and things to improve. Join us for the next one in two weeks. Details soon!
Join us Tuesday 16th of JULY for a #tidyomics Zoom celebration and open discussion about #future plans!
8.30AM US time (New York, EDT)
1.30PM Europe time (London, BST)
10.30PM Australia time (Sydney, AEST)
Zoom: unimelb.zoom.us/j/8833403951...
Password: 542990
#everyone welcome!
#TidyOmics
Harmonizing different omics packages with a common R syntax/grammar
tidySpatialExperiment "provides specialized operations such as gating based on geometric & hand-drawn shapes"😍
#NatureMethods 2024
www.nature.com/articles/s41...
📢🎉 Our lab is recruiting x3!
#Postdoc & #PhD Join from 🌏 inc AU, EU, US! Great scientific environment and a very attractive salary.
1. #AI for #singlecell biology
2. #Multiomics, immuno diagnosis (sc+spatial+metab.)
3. #tidyomics + #HPC
Plz share! 🙏 mangiolalaboratory.github.io/Mangiola-Lab...
To celebrate 🥳 and discuss future plans of #tidyomics, we are organizing a #Zoom party/getting-together!
This is #open to everyone, so please join us and let's walk together!
When would you prefer? Please reply to the #poll below for the best time zone.
#tidyomics made it to #NatureMethods! "The tidyomics ecosystem: Enhancing omic data analyses", 👏🏽 Will, Timothy, and Team!
32 researchers | 26 institutes | 10 countries | 4 continents
A #crowd/#community-research success
nature.com/articles/s41...
#CZI, Thanks @mikelove.bsky.social !
I will be at the #ECCB2024 this September. If someone wants to join me in teaching/helping with the #tidyomics #workshop please let me know!
eccb2024.fi/workshops-tu... Together is more fun! :)
#Bioconductor #ECCB2024 #SAiGENCI #WEHI_research
Abdullah @abdnahid.bsky.social first #Bioconductor package {easylift} is released in Bioc 3.18
Facilitates genomic liftover using existing Bioc tools:
ranges |> easylift("hg38")
Abdullah is one of the group that signed up for #tidyomics open challenges: github.com/tidyomics
