GitHub - iqtree/iqtree3: IQ-TREE version 3: software for phylogenetics IQ-TREE version 3: software for phylogenetics. Contribute to iqtree/iqtree3 development by creating an account on GitHub.

The first release of #iqtree 3 since last may is available github.com/iqtree/iqtree3 @bqminh.bsky.social

very happy to have this work published in mbe @molbioevol.bsky.social can now use phyloHessian to get a (hopefully) improved div time & subs rate estimate, particularly for deep-time or fast‑evolving lineages github.com/evolbeginner... #julialang #iqtree #mcmctree #molecularclock

very glad to host the visit of
@bqminh.bsky.social to my dept at #cuhk, fantastic talk on recent #iqtree development and its appl. on viral #phylo ; also a great experience to interact with people from #hku haogao_gu and to enjoy the nice view of sai kung from the mountain ma on shan 馬鞍山.

📢 MIG Workshop: Intro to phylogenetics

🗓️ Sep 18
📍 Kenneth Myer Building, Education Room, Ground Floor
👩‍🏫 Prof Robert Lanfear & Dr Yao-Ban Chan
🎟️ $60/80 registration

#Phylogenetics #Bioinformatics #EvolutionaryBiology #IQTREE

How does PAML read a rooted tree? IQ-Tree is the software i use most often to build phylogenetic trees. Sometimes I also need to deal with the output of PAML. However, PAML-MCMCtree could read rooted tree in a different order from …

How does PAML read a rooted tree? sishuowang2022.wordpress.com/2025/04/25/h... #phylo #PAML #iqtree

HOW TO SPECIFY Cxx (C10-C60) WITHOUT +G (GAMMA RATE) IN IQ-TREE I recently noted that IQ-Tree’s Cxx (C10-C60) profile mixture substitution models automatically includes +G, the discrete gamma adjustment on relative rates. To see this, run the following an…

HOW TO SPECIFY Cxx (C10-C60) WITHOUT +G (GAMMA RATE) IN IQ-TREE sishuowang2022.wordpress.com/2025/01/23/h...

#phylogenetics #iqtree