Puedo hacer un pipeline con #nextflow con los ojos cerrados, y eso que hace poco me tocó adaptarme en un par de días a unos cambios que han hecho, pero pideme 5 años innecesariamente, crack.
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#NextFlow
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Really interesting integration of #julialang for the algorithms and #nextflow for the pipeline. In principal, the user doesn't need to know any julia to make use of this, but it lets the developers get all of the benefits of that language. Was a fun one too review, and happy to see it accepted!
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nf-core/cutandrun: A #Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets joss.theoj.org/papers/10.21... 🧬💻🧪 github.com/nf-core/cuta...
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🧑💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?
Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.
Please join our nf-core core/infrastructure member Matthias Hörtenhuber, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...
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Long time without a new version of #ibm #nomad #nextflow executor
nf-nomad release 0.4.0-edge3 has just been published
You can find the changelog at
github.com/nextflow-io/...
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🎙️Discover what’s changing in #Nextflow to make pipeline composition easier in our part 2 podcast episode on pipeline chaining, meta pipelines, and automation. 👀 Watch now: hubs.la/Q0473QrH0
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Small social media image with the following text: 17 May 2026 | Vilnius, Lithuania + online Virus Bioinformatics + nf-core Hybrid Collaborative Hackathon Calling all collaborative hackers! Propose a project (with QR code) Registration opens April 2026 Supported by the NFDI4Micorbiota, nf-core, and VirJenDB A satellite event of EBVC ViBioM 2026
X-post from Bluesky:
🧑💻Satellite Hackathon at #ViBioM2026!
Join the #Virus #Bioinformatics + @nf_core Hybrid Collaborative #Hackathon & collaborate on bioinformatic tools and ideas & contribute to reproducible workflows & research infrastructure.
Want to […]
[Original post on genomic.social]
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The #Nextflow Run training by @seqera.io is well underway in San Francisco, with participants learning how to run reproducible data analysis workflows at scale.📈
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Announcing a #job offer in my lab (A2S-CIIMAR, Porto, Portugal) for a higher technician within my project, initMAPAfish that aims to create an open database of microbiome species present in fish species relevant for Portuguese aquaculture.
We are looking for someone with #bioinformatics […]
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Tech stack: #Nextflow DSL2 | Python (statsmodels + joblib) | SQLite | Plotly Dash. Live GCAT demo 👉 polygenie.igtp.cat
Feedback welcome! #PheWAS #PRS #Bioinformatics #Genomics #openscience
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Van a hacer un ciclo de conferencias en mi máster, al que no puedo ir por otros motivos, y me hace gracia que le vayan a dedicar 2 horas a #Nextflow, un programa que llevaré usando como cuatro años y literalmente usé para uno de los trabajos que tenía que entregar.
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My next obsession: workflow managers 🎈Yesterday night I binged videos from #riffomonas about #reproducible research. He used #snakemake , it looks nice! I also looked up #nextflow It looks fierce! So which one to learn?
Any advice? I'll use it for #bioinformatics #pipeline s; I mainly write in #R
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We've been working really hard on a refresh of the super popular #Nextflow training materials.
@geraldinevda.bsky.social has rewritten much of #Hello #Nextflow and #Nextflow #Run and I'm in the process of recording new videos 📹📼🎞️
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Reducing haystacks to needles - ViralClust: A #Nextflow pipeline to cluster viral sequences www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/rnajena/vira...
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Next month, @ewels.bsky.social (Product Manager for OSS at @seqera.io)will be joining the Bioinformatics CRO webinar series to discuss #Nextflow, @nf-co.re, and exciting new features for reproducible bioinformatics at scale. 👇
hubs.la/Q040__J00
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🧑💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?
Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.
Please join our nf-core maintainer Evangelos Karatzas, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...
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🧑💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?
Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.
Please join our nf-core maintainer @rikehanssen.bsky.social, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...
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MobiCT: a UMI-based circulating tumor DNA analysis pipeline. #UMIs #cfDNA #Nextflow #Bioinformatics #Genomics #NARgenomicsAndBioinformatics 🧪🧬 🖥️
academic.oup.com/nargab/artic...
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New #Nextflow #Podcast is out! 🎙️
It's been a while..! 😅 Had a lot of fun looking back at 2025, so much happened..
Stay tuned for more podcast episodes in 2026, hoping to get back to a more regular cadence again 🙂
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Está mal que yo lo diga, pero el pipeline de #Nextflow que estoy haciendo está quedando bonito. Eso sí, tengo al portátil viejo en plan FUUUUUUU de tanto ventilador.
Sorpresa: los datos que seleccioné para hacer una simulación de artículo y póster apenas me han dado resultados 🙃.
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Check out the recent lakeFS blog post showcasing how
@cytoreason.bsky.social have utilized #Nextflow and #lakeFS to treat their disease models as versioned, reproducible data products.🦠 The result: a release cycle that's faster, cleaner, and more reproducible. hubs.la/Q03_5ynF0
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Me he creado un pipeline de #Nextflow para una asignatura, que luego usaré para futuros trabajos si tengo que lucirme, que pilla FASTQ del repositorio GEO y termina haciendo análisis básicos y un informe. Pues bien, resulta que me funciona para todo menos para los FASTQ que quiero descargarme.
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That little push you needed to start learning not only basic #Nextflow, but also advanced skills and new features. 😉
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Next #Nextflow training week coming soon!
We're hoping to have brand new fresh material ready, including updated Nextflow syntax. Should make for a great refresher even if you've dabbled in Nextflow before!
Sign up for free to be notified when it's ready and get help as you progress 📆🧑🎓
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New Post: Your first production-grade pipeline (with a @nextflow.io example). A minimal definition + practical hardening steps (profiles, observability, smoke tests, versioning) with a runnable template!
#Bioinformatics #Nextflow #Reproducibility #ResearchSoftware
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🧬 Incredibly Exciting New NGS Data Analysis Workshops for 2026 - 🌐 www.ecseq.com
#NGS #VariantCalling #Illumina #singleCell #nextflow #bisulfiteseq #RNAseq #DNAseq @10xgenomics.bsky.social @nextflow.io
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Workflow map of the venae pipeline https://github.com/phac-nml/venae
We built venae, a pipeline written in #Nextflow, which removes host reads, assess quality, identifies species, performs assembly, detects #AMR genes, and runs species-specific typing
🧵3/4
github.com/phac-nml/venae
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Slide containing text: Meta-*omics Nextflow pipeline community exhibition day Organised by James Fellows Yates Supported by NFDI4Microbiota, Nextflow Ambassador program, and deNBI
🎉 Huge shout out to everyone who instructed and participated in yesterday's online Meta-*omics #Nextflow Pipeline Community Exhibition Day!
🧑🏫 Over 9 hours, we had 15 different pipelines demo'd by their lead developers, and giving an international cohort of […]
[Original post on genomic.social]
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David Condon just released a #NextFlow/ #snakemame pipeline/logger alternative in #Perl:
metacpan.org/pod/SimpleFlow
which should make debugging and running very complex #pipelines much easier.
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