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Scheme of how NETosis works. Neutrophils contain many granules that are filled with bactericidal enzymes. Once the cells are stimulated by the presence of pathogens, these granules release their content to the extracellular space, but also into the nucleus. 
Inside the nucleus, MPO and other factors lead to decondensation of chromatin, i.e. eviction of nucleosomes.
The nucleus disintegrates and subsequently, the neutrophil bursts open and releases the decondensed chromatin to the extracellular space. There the NET can entrap the pathogen. As NETs are functionalized with bactericidal enzymes, they can directly kill pathogens they contact.

Scheme of how NETosis works. Neutrophils contain many granules that are filled with bactericidal enzymes. Once the cells are stimulated by the presence of pathogens, these granules release their content to the extracellular space, but also into the nucleus. Inside the nucleus, MPO and other factors lead to decondensation of chromatin, i.e. eviction of nucleosomes. The nucleus disintegrates and subsequently, the neutrophil bursts open and releases the decondensed chromatin to the extracellular space. There the NET can entrap the pathogen. As NETs are functionalized with bactericidal enzymes, they can directly kill pathogens they contact.

During #NETosis, neutrophils decondense their #chromatin by disassembling #nucleosomes. Then, their nucleus breaks down and the cells burst open. The decondensed chomatin then forms the NET.

As #NETs are sticky and functionalised with bactericidal enzymes, they can trap and kill bacteria.

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Myeloperoxidase transforms chromatin into neutrophil extracellular traps - Nature Myeloperoxidase, a highly expressed neutrophil protein, disassembles nucleosomes, facilitating neutrophil extracellular trap (NET) formation, and binds stably to NETs extracellularly.

We just published this paper of which I am immensely proud: www.nature.com/articles/s41...

In the study, we uncover how the enzyme MPO disassembles #nucleosomes in a process called NETosis, a funky mechanism of #neutrophils to kill #pathogens that you might have never heard of.

Let's dive in... 🧵

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Single-Molecule Studies with AFM and High-Speed AFM: From Nucleosomes to Chromosomes Atomic force microscopy (AFM) is a single-molecule imaging technique invented in 1985. Development of high-speed AFM (HS-AFM) in 2001 now allows for the direct visualization of the dynamics and kineti...

Interested in studying #nucleosomes, #chromatin, or #chromosomes at the single molecule level, atomic force microscopy (#AFM) is easy to use technique. Here is a great methods paper to guide you through the whole process. Big thanks to Keir Neuman and Yamini Dalal.

link.springer.com/protocol/10....

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if i were a better person i would do a tweetorial on our recent paper - but, hey, read the paper. its right there, waiting for you. #Giantvirus #histones are cool! their #nucleosomes are cool. check it out.! thats the tweetorial.
rdcu.be/exXBX

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Melbournevirus encodes a shorter H2B-H2A doublet histone variant that forms structurally distinct nucleosome structures Nature Communications - Melbournevirus encodes a conserved shorter H2B-H2A doublet variant. Here the authors report a cryo-EM structure of a nucleosome-like particle reconstituted with viral H4-H3...

our paper is online! rdcu.be/exXBX . Who would have thought that some #giantviruses not only have #histones, but even histone variants that make weird #nucleosomes (pdb 9CVT). Fantastic work from Ale Villalta and Chelsea Toner, with Hugo Bisio @molbiolgv.bsky.social and Chantal Abergel

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Nucleosomes--which are composed of histone proteins (purple) wrapped in strands of DNA (green)--appear to regulate gene activity via inherent biophysical properties. Image credit: Science Source/THOM LEACH

Nucleosomes--which are composed of histone proteins (purple) wrapped in strands of DNA (green)--appear to regulate gene activity via inherent biophysical properties. Image credit: Science Source/THOM LEACH

Here’s the secret to how #nucleosomes shape the #genome. In PNAS Journal Club: www.pnas.org/post/journal...

#histone #chromatin #GeneExpression #condense-seq #GeneActivity

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Nucleosomes as blueprints of genome architecture - Nature Reviews Molecular Cell Biology Nucleosomes — the basic unit of chromatin architecture — have intrinsic biophysical features of large-scale genome organization.

Native nucleosomes intrinsically encode genome organization principles. #Nucleosomes #GenomeArchitecture #Nature
www.nature.com/articles/s41...

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VolitionRx Limited Makes Breakthrough in Cat Cancer Detection with Nucleosome Testing VolitionRx has published significant findings on nucleosome detection in cats, marking a pivotal advancement in feline cancer diagnostics and creating new commercial opportunities.

VolitionRx Limited Makes Breakthrough in Cat Cancer Detection with Nucleosome Testing #United_States #Henderson #VolitionRx #nucleosomes #cat_cancer

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SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

How is the H2A.Z #histone variant targeted to specific sites in the genome by the SWR #chromatin remodeler? This study shows that DNA sequences contribute to SWR specificity and that SWR’s H2A.Z insertion activity is stimulated by polyA tracts in #nucleosomes @plosbiology.org 🧪 plos.io/4kggWyD

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SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

How is the H2A.Z #histone variant targeted to specific sites in the genome by the SWR #chromatin remodeler? This study shows that DNA sequences contribute to SWR specificity and that SWR’s H2A.Z insertion activity is stimulated by polyA tracts in #nucleosomes @plosbiology.org 🧪 plos.io/4kggWyD

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SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

SWR-dependent H2A.Z-containing nucleosomes. Top left: Structural representations of heterotypic H2A/H2A.Z nucleosome (left; PDB: 5B32) and homotypic H2A.Z nucleosome (right; PDB: 5B33) from humans. Pink residues correspond to T46 of yeast Htz1, and the blue residue corresponds to N39 of yeast Hta1. Right: Heatmaps of SWR-dependent H2A.Z signals (WT minus swc2 ) aligned at the center of +1 nucleosomes (left) or at the start and end of open reading frames (ORF) (right). Bottom left: Relative number of identified H2A.Z-enriched sites in the indicated categories.

How is the H2A.Z #histone variant targeted to specific sites in the genome by the SWR #chromatin remodeler? This study shows that DNA sequences contribute to SWR specificity and that SWR's H2A.Z insertion activity is stimulated by polyA tracts in #nucleosomes @plosbiology.org 🧪 plos.io/4kggWyD

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Nadisha Gamage posing with the Node's polaroid frame in front of her poster. The text on the frame reads: "Nadisha Gamage #nucleosomes #cryoelectronmicroscopy #stemcells #chromatin #fibsem"

Nadisha Gamage posing with the Node's polaroid frame in front of her poster. The text on the frame reads: "Nadisha Gamage #nucleosomes #cryoelectronmicroscopy #stemcells #chromatin #fibsem"

📸 Nadisha Gamage @rosfrankinst.bsky.social took a photo with the Node's polaroid frame during the poster session yesterday #biologists100

The key words of her research are #nucleosomes #cryoEM #stemcells #chromatin #FIBSEM

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Saying goodbye to our lab manager of 25 years. we owe her EVERYTHING, she will be missed. To make sure she doesnt forget about #nucleosomes, we presented her with nucleosome art by the gifted Montana Fowler. also fun to hang out with current and many former lab members!

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On the left, the scene from the DNA music video at 3:07 where the choreography forms a knot. On the right, a diagram of a DNA nucleosome.

On the left, the scene from the DNA music video at 3:07 where the choreography forms a knot. On the right, a diagram of a DNA nucleosome.

The #BTS DNA choreography involves some deep biology where they dance a nucleosome. It's been shown that DNA (arms) tighten, loosen, and twist around histones (the guy's bodies) in cells which serves a packaging role and also affects which portions of the DNA can be easily read.

#DNA #nucleosomes

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Hi DNA replication and #chromatin enthusiasts:
Want to watch the replisome dealing with #nucleosomes?
Nynke Dekker (TU Delft/Uni Oxford) will present single-molecule work on the replication machinery in the context of chromatin!
Register now ( #webinar with live Q&A):
us02web.zoom.us/webinar/regi...

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Writing my thesis about nucleosomes

I'm turning into a fragile nucleosome 🧶

#nucleosomes

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On this #ThrowbackThursday we go back to our Episode #58 where we talked with Efrat Shema from the Weizmann Institute of Science about her work on Single Molecule Imaging of #chromatin, and the analysis of #nucleosomes in plasma. #epigenetics

Listen here: www.activemotif.com/podcasts-efr...

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