galaxyproject.org/news/2025-11-06-egd2025-...

#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #EGD2025 #Talks #ScientificTalk #Presentation #Event (2/2)

https://zenodo.org/records/16683440

#onboarding #engagement #EGD2025 #community_engagement #eurosciencegateway #galaxyproject #eosc #adoption #fair #open_science (2/2)

#infrastructure_model #modular_design #EGD2025 #infrastructure #sustainable #eurosciencegateway #galaxyproject #eosc #fair #open_science (2/2)

D3.1 Operations documentation on the Open Infrastructure deployment Development of the Open Infrastructure and Pulsar Network to support distributed job execution and scalable Galaxy deployments across Europe. Project: EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963. Document: D3.1 Operations documentation on the Open Infrastructure deployment Work Package: Work Package 3. Pulsar Network: Distributed heterogeneous compute. Task: Task 3.1 Develop and maintain an Open Infrastructure baseddeployment model for Pulsar endpoints. Task 3.3 Build a European-wide network of Pulsar sites. Task 3.5 Developing and maintaining national or domain-drivenGalaxy servers. Lead Beneficiary: INFN Contributing Beneficiary: INFN, ALU-FR, CNRS, CESNET, UiB, BSC, VIB, IISAS, TUBITAK and CNR Executive Summary Work Package 3 of the EuroScienceGateway project is divided into 5 tasks, aimed at bringing into production (TRL9) the Pulsar Network , a distributed computing network that allows public Galaxy servers to offload jobs to remote computing clusters provided by project partners. Specifically, this deliverable describes the work done in tasks 3.1, 3.2, 3.3 and 3.5. The main objectives of WP3 are: 1) to simplify the deployment and management of new Pulsar and Galaxy endpoints (T3.1 and T3.5), to make Pulsar compatible with the GA4GH TES specifications (T3.2), and to deploy new Pulsar endpoints (T3.3)

https://zenodo.org/records/16761933
https://zenodo.org/records/15920451

#heterogenuous_compute #EGD2025 #distributed_network #eurosciencegateway #galaxyproject #eosc #fair #pulsar_network #open_science (2/2)

EuroScienceGateway MS3: Initial EuroScienceGateway workflows registered WorkflowHub is a registry of computational workflows, provided as a EOSC Service by ELIXIR-UK, and used by over 200 different research projects, institutions and virtual collaborations. For this milestone of EuroScienceGateway (ESG), the project has developed an onboarding guide for WorkflowHub and registered in WorkflowHub the initial ESG workflows that have been developed and maintained by the project.

https://zenodo.org/records/15094824
https://zenodo.org/records/10728922

#EGD2025 #research #eurosciencegateway #galaxyproject #reusable_research #eosc #fair #open_science (2/2)

CoFest and Hackathon

CoFest and Hackathon

CoFest and Hackathon

CoFest and Hackathon

Day 3 of European Galaxy Days, participants at CoFest and Hackathon.
More than 20 experts from microbiology to admins to tool and workflow developers are tackling challenges across every difficulty and domain.

#EGD2025 #galaxyproject #hackathon #eosc #cofest #fair #open_science

dadrasarmin.bsky.social

@https://bsky.app/profile/dadrasarmin.bsky.social
#EGD2025 #coordination #eurosciencegateway #galaxyproject #dissemination #management #eosc #fair #open_science (2/2)

Exploring the Galaxy Training Network: What's Here, What's New

Teresa Müller presented 'Exploring the Galaxy Training Network: What's Here, What's New' on Day 2 of European Galaxy Days.
Read more: https://training.galaxyproject.org/

#galaxy_training_network #EGD2025 #galaxy_training #galaxyproject #eosc #open_science_training #fair #gtn #open_science

Laniakea Nebula: VPN-Based Isolation for Galaxy Private Deployments

Marco Antonio Tangaro presented 'Laniakea Nebula: VPN-Based Isolation for Galaxy Private Deployments' on Day 2 of European Galaxy Days.
Read more: https://galaxyproject.org/use/laniakea/

#deployment #EGD2025 #vpn \isolation #laniakeanebula #galaxyproject #eosc #fair #open_science

Highlighting RO-Crate features in Galaxy and why you should use them

On Day 2 of European Galaxy Days, Eli Chadwick presented 'Highlighting RO-Crate features in Galaxy and why you should use them'.
Read more: https://www.researchobject.org/ro-crate/

@brcanalytics.bsky.social
#research_object #fair_data #EGD2025 #fair_analysis #galaxyproject #ro_crate #eosc (1/2)

Galaxy Earth-System

On Day 2 of European Galaxy Days, Jérôme Detoc presented 'Galaxy Earth-System'.
Read more: https://earth-system.usegalaxy.eu/

#EGD2025 #earth_system #galaxyproject #eosc #fair #open_science

A 'trivial' task: how to access my files and projects on the HPC filesystem from galaxy?

Nikolay Vazov presented 'A 'trivial' task: how to access my files and projects on the HPC filesystem from Galaxy?' on Day 2 of European Galaxy Days.

#hpc #EGD2025 #filesystem #galaxyproject #eosc #fair #open_science

GCC can attest that Brno is a very nice location, and the Galaxy Europe team can confirm that it’s quite accessible by train (either via Prague or Vienna).

#EGD2025 #tool_management #galaxyproject #automating #eosc #fair #automation #open_science (2/2)

Sustainability of Galaxy (EuroScienceGateway)

Jain Smitesh presented 'Sustainability of Galaxy (EuroScienceGateway)' on Day 2 of European Galaxy Days.
Read more: https://doi.org/10.5281/zenodo.16030329

#galaxy #EGD2025 #eurosciencegateway #galaxyproject #eosc #sustainability #fair #open_science

Modern genome browsing in Galaxy with Jbrowse2

On Day 2 of European Galaxy Days, Anthony Bretaudeau presented 'Modern genome browsing in Galaxy with Jbrowse2'.
Read more: https://usegalaxy.eu/root?tool_id=jbrowse2

#genomics #jbrowse2 #EGD2025 #genome #galaxyproject #eosc #fair #genome_browsing #open_science

Galaxy & Onedata integration, managing Galaxy data using Onedata, BYOD & BYOS

Lukasz Opiola presented 'Galaxy & Onedata integration, managing Galaxy data using Onedata, BYOD & BYOS' on Day 2 of European Galaxy Days.
Read more: https://onedata.org/

#EGD2025 #data #galaxyproject #onedata #data_access #eosc #fair #integration #open_science

Update by the Imaging Community

On Day 2 of European Galaxy Days, Beatriz Serrano-Solano presented Update by the Imaging Community.
Read more: https://galaxyproject.org/community/sig/image-analysis/

@abretaud.bsky.social
#imaging_community #bioimaging #EGD2025 #galaxyproject #eosc #fair #community #open_science

The Future of Galaxy Tools

On Day 2 of European Galaxy Days, Marius van den Beek presented The Future of Galaxy Tools.
Read more: https://sci-scale.net/

#EGD2025 #galaxyproject #galaxy_tools #eosc #software #fair #open_science

Galaxy Ecology: 2025 Update

On Day 2 of European Galaxy Days, Yvan Le Bras presented Galaxy Ecology: 2025 Update.
Read more: https://ecology.usegalaxy.eu/

#EGD2025 #ecology #galaxyproject #galaxy_ecology #eosc #fair #open_science

Making Galaxy workflows sustainable and FAIR

Nicola Soranzo presented 'Making Galaxy workflows sustainable and FAIR' on Day 2 of European Galaxy Days.
Read more: https://www.earlham.ac.uk/research-project/elixir-uk

#EGD2025 #galaxy_workflows #sustainable #galaxyproject #workflows #eosc #fair #open_science

@abretaud.bsky.social presenting JBrowse 2 that is now available in @galaxyproject.bsky.social!! 🎉🎊
Users can now visualize multiple tracks on a browser, with specific colors, metadata, and other features.
Go try it out 👈

#EGD2025

the flow of @galaxyproject.bsky.social talks has been interrupted by a song by Yvan at #EGD2025

@nsoranzo.bsky.social
#eln #elabftw #arc #EGD2025 #galaxyproject #distributed_computing #rspace #middleware #eosc #fair #electronic_lab_notebook #open_science (2/2)

Simple and Secure Credential Handling for Tools in Galaxy

Alireza Heidari presented 'Simple and Secure Credential Handling for Tools' in Galaxy on Day 2 of European Galaxy Days.

#credential #EGD2025 #credential_handling #galaxyproject #secure_credential #eosc #fair #open_science

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Lively Day 2 poster session started with buzzing debates and novel Galaxy usecases to boost research and teaching FAIRness across disciplines.

#EGD2025 #galaxyproject #eosc #fair #open_science

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Day 2 posters sparked discussions and practical Galaxy solutions to make research more FAIR in different fields.

#EGD2025 #galaxyproject #eosc #fair #open_science

Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”)

On Day 2 of European Galaxy Days, Yvan Le Bras presented Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”).

#interactive #EGD2025 #jupyterlab #tool_development #galaxyproject #jupyter_notebook #eosc #fair #open_science

Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”)

On Day 2 of European Galaxy Days, Yvan Le Bras presented Two-Step Approach for Galaxy Tool Development Using Jupyter (“Interactive JupyterLab Notebook”).

#interactive #EGD2025 #jupyterlab #tool_development #galaxyproject #jupyter_notebook #eosc #fair #open_science

pyGenomeTracks – make a publishable figure out of your NGS data

On Day 2 of European Galaxy Days, Lucille Delisle presented pyGenomeTracks – make a publishable figure out of your NGS data.
Read more: https://github.com/deeptools/pyGenomeTracks

#ngs #next_generation_sequencing #EGD2025 #biology #galaxyproject #eosc #fair #genomics #open_science

Serving locally hosted LLMs with Galaxy

On Day 2 of European Galaxy Days, Arash Kadkhodaei presented 'Serving locally hosted LLMs with Galaxy'.

#EGD2025 #ai #llm #galaxyproject #eosc #fair #machine_learning #open_science