Tan et al. present panCG, an integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences, enabling the reference-free construction of pangene and pan-conserved noncoding sequences.
🔗 doi.org/10.1093/molbev/msag075
#evobio #molbio #pangenomes
Workshop on Innovative applications of pangenomes in agriculture. April 12 2026 between 5-7pm. Text reads: "Moving beyond variant counting and applications of standard single-reference methods. Discover new approaches for applying pangenomes in agricultural research."
Check out this workshop at next month's #AGBTAG26 led by Rachel Rusholme Pilcher and John Lovell on innovative applications of #pangenomes in agriculture.
www.agbt.org/agenda-2/?ut...
@agbt.bsky.social @jotlovell.bsky.social
Two-way thick black arrows show the influence or interaction, including (1) arrows from the center to the challenges signify how super-pangenomes address/amplify these challenges and (2) line-with-bars from challenges to the center suggest how these challenges impact/hinder the adoption of super-pangenomes. Circular colored lines highlight the interplay between challenges, as shown by the colored text. Created with BioRender.com.
Key challenges in adopting super #pangenomes as new reference #genomes in research and #breeding
🔗 www.nature.com/articles/s44...
@plantevolution.bsky.social @planteditors.bsky.social @scinews.bsky.social @sebiology.bsky.social @plantsciencedbg.bsky.social @natgenet.nature.com @cropxr.bsky.social
Join us at #SMBE2026 in Copenhagen this summer!
🔵 With @ergabiodiv.bsky.social & @official-smbe.bsky.social
🟣 Symposium 21 | From genomic graphs to evolutionary insights: standardising #pangenomes for population inference
🟢 smbe2026.org/programme/
#biodiversity #genomics
Scalesia gordilloi, part of a large adaptive radiation of Asteraceae in the Galápagos.
Check out this new #AJB On the Nature of Things essay!
#Pangenomes as a framework for adaptive radiation, speciation & adaptation
By @nicolo-tellini.bsky.social , Ole Tørresen, David Edwards, Loren Rieseberg, Kjetill Jakobsen & José Cerca
doi.org/10.1002/ajb2... #botany #plantscience #evolution
Pangenomic structural variant patterns reflect evolutionary diversification in Brassica napus. #StructuralVariants #Pangenomes #BrasicaNapusGenome #PlantGenomics #Bioinformatics #GenomeBiology 🧪🧬 🖥️
link.springer.com/article/10.1...
The value of structural variants to conservation genomics in the pangenome era. #StructuralVariants #SVs #Bioinformatics #Genomics #ConservationGenomics #Pangenomes #JournalOfHeredity
academic.oup.com/jhered/advan...
Explore how pan-genome studies are improving soybean breeding research. Gain insights into genetic diversity and key traits driving agricultural advancements.
Read more: https://bit.ly/49QL2Fe
#PanGenomes #SoybeanResearch #CropImprovement #Genomics #Agrigenomics
Join us tomorrow to explore Ensembl resources for pangenomes! Leanne Haggerty is presenting on Ensembl annotation for human, model organism, livestock & crop plant pangenomes.
Free registration: zurl.co/3sSUJ
Full series:zurl.co/XrVdc
#Pangenomes #Ensembl
As new human assemblies become available on beta.ensembl.org - which human reference genome will you choose? This article explores the question with insights from Ensembl’s own Fergal Martin - www.nature.com/articles/s41...
#HumanGenomics #Pangenomes #ReferenceGenomes
1/2 Want to become up to date with pangenomes and genome graphs and their history? Check out this fantastic review by @zbao.bsky.social!
Complexity welcome: Pangenome graphs for comprehensive population genomics
#pangenomes #plantscience #genomegraphs
www.cambridge.org/core/journal...
Movi 2: Fast and Space-Efficient Queries on Pangenomes. #Pangenomes #SequenceQueries #Genomics #Bioinformatics @biorxiv-genomic.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
💡 #KnowledgeHighlight | Pangenome Graphs - course by The Gulbenkian Training Programme in Bioinformatics
gtpb.github.io/CPANG22/
Explore open-access training materials in the ERGA #KnowledgeHub ➡️ knowledge.erga-biodiversity.eu
#pangenomes
From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes. #YeastGenomes #Pangenomes #GeneticVariation #StructuralVariants #LongRead #Sequencing @nature.com 🧬 🖥️
www.nature.com/articles/s41...
The focus of this second meeting on #pangenomes is on the relevance of the prokaryotic pangenome for human, animal and environmental health as part of the #OneHealth context, tackling the prevention and treatment of #infectious #diseases.
Explore how pan-genome studies are improving soybean breeding research. Gain insights into genetic diversity and key traits driving agricultural advancements.
Read more: https://bit.ly/49QL2Fe
#PanGenomes #SoybeanResearch #CropImprovement #Genomics #Agrigenomics
Graphic detailing information for the webinar "Evolution of the accessory genome": the webinar will run on 8 October 2025, 14:30 - 15:30 BST. The speaker is Hsueh-Chien (Raymond) Cheng, from the Wellcome Sanger Institute. A photo of the speaker is displayed close to his name.
Join us next week for the second #webinar in our #pangenomes series!
We will talk about the evolution of the accessory genome in bacteria, and how it plays an essential role in microbial diversity and adaptation.
Registration is free but essential: lnkd.in/e59HTpr8
Pangenome-based identification of cryptic pathogenic variants in undiagnosed rare disease patients. #GeneticVariants #PathogenicVariants #Pangenomes #LongRead #Sequencing @medrxivpreprint.bsky.social 🧬 🖥️
www.medrxiv.org/content/10.1...
Finding easy regions for short-read variant calling from pangenome data. #ShortReads #Pangenomes #Bioinformatics #Genomics @gigascience.bsky.social 🧬 🖥️
academic.oup.com/gigascience/...
Thanks for sharing! Would have liked to see your talk! The microbial #pangenomes session was my favorite besides the #microbiome one.
Pangenome analysis of transposable element insertion polymorphisms reveals features underlying cold tolerance in rice. #TransposableElements #TE #Pangenomes #RiceGenomes @natcomms.nature.com
www.nature.com/articles/s41...
Synteny and linkage decay in bacteriophage pangenomes. #Bacteriophages #Pangenomes @biorxiv-genomic.bsky.social
www.biorxiv.org/content/10.1...
Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia. #PhasedGenomes #Pangenomes #HumanPopulations #ScientificData 🧬
www.nature.com/articles/s41...
Happy to be able to finally share our NLR pangenome paper, out now in CHM.
"Pangenomic context reveals the extent of intraspecific plant NLR evolution"
www.cell.com/cell-host-mi...
#plantscience #plantimmunity #pangenomes #science #nlr
Building pangenomes for domesticated and wild tree species: genomic complexity and strategies. #Pangenomes #TreesGenomes @biorxiv-bioinfo.bsky.social
www.biorxiv.org/content/10.1...
Explore how pan-genome studies are improving soybean breeding research. Gain insights into genetic diversity and key traits driving agricultural advancements.
Read more: bit.ly/49QL2Fe
#PanGenomes #SoybeanResearch #CropImprovement #Genomics #Agrigenomics
PangenePro: an automated pipeline for rapid identification and classification of gene family members. #Pangenomes #GeneClassification #Genomics #Bioinformatics @bioinfoadv.bsky.social 🧬 🖥️
academic.oup.com/bioinformati...
💬 “When you compare different systems of annotation, you can end up accidentally inferring results that are technical, not biological.”
Scientists at Earlham Institute are developing #annotation tools to support higher-quality and more comparable data for #pangenomes.
🔗 buff.ly/TMOWcG8
🖥️🧬
PanVA: a visual analytics tool for pangenomic variant analysis. #Pangenomes #VariantAnalysis #DataVisualization #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
Pangenome-Informed Language Models for Synthetic Genome Sequence Generation. #LLMs #Pangenomes #SyntheticGenomeSequences #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social
www.biorxiv.org/content/10.1...
