CARD
Conditional AutoRegressive-based cell-type Deconvolution #SpatialTranscriptomics

Work on #Visium ST #SlideseqV2

Gaussian kernel to model #SpatialCorrelation

Impute cell type & gene info at unmeasured locations

#NatureBiotech 2022
www.nature.com/articles/s41...

Correcting #BatchEffect for #SpatialTranscriptomics
#PRECAST

Integrating spatial data #Visium, ST, #SlideseqV2 from different slides/subjects
Housekeeping gene-based

vs #Harmony #SeuratV3
1⃣Data integration
2⃣Aligned embeddings
3⃣Spatial clustering

#NatureComms 2023
www.nature.com/articles/s41...

Benchmarking sequencing-based #SpatialTranscriptomic methods

#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq

Different ST methods yield inconsistent cell-cell communication results by #CellChat #CellPhoneDB

bioRxiv 2023
www.biorxiv.org/content/10.1...