Spatial Gut-Microbiome MegaTranscriptomics

Use in situ polyadenylation on #Visium #StereoSeq to enhance host & bacterial RNA recovery (⏫99-fold)

Fresh-frozen🐭GI

Non-coding RNAs enriched to gut wall

Microorganisms enriched at CRC tumor boundary

#NatMicrobiol 2026
www.nature.com/articles/s41...

Plants challenge spatial transcriptomics due to structural complexity, rigidity and high water content.
Dr. Shahid Mukhtar from Clemson University shows how Stereo-seq delivers true single-cell maps across plants and microbes.
Thu Feb 5, 11 am PT.
RSVP: https://bit.ly/3LtzQqo
#StereoSeq #PlantBio

We’re heading to PAG 33!

Visit Booth 405 to see how DNBSEQ and Stereo-seq accelerate plant and animal genomics, from genome assembly to spatial insights.

Join our industry workshop on Jan 13, 1:30–3:40 pm.

Learn more: https://www.completegenomics.com/events/pag-33/

#PAG33 #DNBSEQ #StereoSeq

🚨 SAGC STOmics Spatial Transcriptomics Services - EOFY Promo!

If you are interested in #Stereoseq now is the time to contact us.

✅ DIY and full-service options
✅ Single-cell resolution (FF & FFPE)
✅ No equipment needed

More Info 👉 hubs.ly/Q03rp0Gh0
@decodescience.bsky.social

Grateful to everyone who joined us @sahmri.bsky.social for the Festival of Multiomics #MGIFOMO2025. Inspiring talks by Fernando Rossello, Adrienne Sullivan, Chris Chen, and our STOmics panel. Exciting to see the roadmap for #Stereoseq. #MultiOmics #SpatialOmics @decodescience.bsky.social

Systematic Benchmarking of High-Throughput Subcellular Spatial Transcriptomics Platforms Recent advancements in spatial transcriptomics technologies have significantly enhanced resolution and throughput, underscoring an urgent need for systematic benchmarking. To address this, we collecte...

The heroes we need and don't deserve - a great benchmarking resource comparing BGI's #stereoseq with @brukercorporation.bsky.social 's #CosMX 6k and @10xgenomics.bsky.social #VisiumHD and #Xenium 5k - Packed with lots of interesting metrics and observations, including transcript diffusion...

Spatial transcriptomic landscape unveils immunoglobin-associated senescence as a hallmark of aging Spatial transcriptomic analysis of multiple tissues in male mice during aging identifies senescence-sensitive spots and immunoglobulin G accumulation as characteristic features of tissue aging and sug...

Spatial transcriptomic landscape unveils immunoglobin-associated senescence as a hallmark of aging #spatialtranscriptomics #StereoSeq #aging

www.cell.com/cell/fulltex...

STCellbin
Use Nuclei+Cell Membrane/Wall stains to improve #CellSegmentation & single-cell-resolved #SpatialTranscriptomics

Tailored for #StereoSeq, but likely implementable for other ST methods

#GigaByteJournal 2024
gigabytejournal.com/articles/110

Benchmarking sequencing-based #SpatialTranscriptomic methods

#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq

Different ST methods yield inconsistent cell-cell communication results by #CellChat #CellPhoneDB

bioRxiv 2023
www.biorxiv.org/content/10.1...