Phytool logo. This is the logo of the barcoding reference library dedicated to microalgae

This publication is the summary of 6 years developments. All tools are freely available at
carrtel-collection.hub.inrae.fr/barcoding-databases/phyt...

Schéma des étapes de préparation et d’analyse des échantillons de phytoplancton par métabarcoding ADNe pour utilisation en bioindication.

Notre nouvel article

Analyse du phytoplancton par l’ADN environnemental : nouveaux outils pour évaluer la qualité écologique des plans d’eau

#phytoplankton #edna #metabarcoding #lake

Bravo @ clelia DURAN https://orcid.org/0009-0000-0450-3842

https://revue-set.fr/article/view/9926

Thanks to @shump.bsky.social and this nice group of attendees who has joined us from all over the world for the #eDNA #Metabarcoding using @nanoporetech.com

We wish you all the best with your cool projects!

www.physalia-courses.org/courses-work...

Workshop metabarcoding data FAIRification - 10 avril 2026 - IFB | ELIXIR-FR

🔎 Au programme de cet atelier : partage d’expériences, normes et bonnes pratiques, FAIRification des données de métabarcoding, …
🔗 Pour plus d’informations :
www.ifb-elixir.fr/generale/wor...
#FAIR #Metabarcoding #MUDIS4LS #data

We’ve just kicked off the 2nd edition of our course on #eDNA #Metabarcoding using @nanoporetech.com data, together with @shump.bsky.social! Excited to welcome a fantastic group of attendees joining us from all over the globe 🌎🧬

Another great edition of the #Metabarcoding in #MicrobialEcology course is coming to an end!

A big thank you to our fantastic instructors Anna, Luigi & @fonamental.bsky.social & to all the participants who joined us this week (we’re missing a few in the group photo!)🚀

Are you using DNA #metabarcoding to analyze marine microbial community composition? Apply to participate in a new intercalibration activity! Read more about this effort and apply to participate by March 31: www.us-ocb.org/metabarcodin... (scroll down to "Join Us") @biogeoscapes.bsky.social 🌊

@fonamental.bsky.social kicking off the 10th edition of the #Metabarcoding in #MicrobialEcology workshop with Anna Sandionigi, Luigi Borruso and a great cohort of participants!

They are gonna learn bioinformatic processing of NGS data and key multivariate stats through lectures & hands-on exercises

HAPP: High-accuracy pipeline for processing deep metabarcoding data Author summary Charting and monitoring biodiversity is essential for understanding and protecting ecosystems, but it has been difficult to collect data cost-efficiently at scale. An approach that pote...

“HAPP: High-accuracy pipeline for processing deep metabarcoding data” from Fredrik Ronquist’s group doi.org/10.1371/jour... #metabarcoding

Sampling Design and Sample Processing Affect Soil Biodiversity Assessments Biodiversity surveys require an appropriate sampling design for optimal performance and comparability across space and time and across studies. Based on PacBio and Illumina amplicon sequencing of ani...

Manuscript link: onlinelibrary.wiley.com/doi/10.1111/... #soil #eDNA #metabarcoding @myco-microbio.bsky.social

What a wonderful edition of the #eDNA #Metabarcoding workshop!
Huge thanks to @leeselab.bsky.social @tillmacher.bsky.social @dominikbuchner.bsky.social for sharing their expertise, and to our curious, active, and interactive attendees—good luck with your data!

Metabarcoding in microbial Ecology

🦠 Interested in #MicrobialEcology? Want to use #Metabarcoding to identify and characterize bacterial communities and their abundance in your samples?

Join us this March to learn hands-on how to analyse metabarcoding data using #QIIME2 and R!

www.physalia-courses.org/courses-work...

We’ve kicked off the #eDNA #Metabarcoding workshop with @leeselab.bsky.social , @dominikbuchner.bsky.social , @tillmacher.bsky.social, and a highly international group of attendees working on a variety of exciting projects.

Looking forward to a fun and productive week of learning! 🎉

This is an interesting example of using citizen science to learn more about the lives of wild pollinators.

#pollinators #citizenscience #metabarcoding

A striking example of harvesting the power of citizen science to monitor wild pollinators.

#pollinators #bees #wasps #citizenscience #metabarcoding

5,000 #students across Canada help map the secret lives of solitary cavity-nesting #bees and #wasps.

🐝This study used #community #science & #metabarcoding to reveal hidden insect interactions.

👇See what they found here: doi.org/10.3897/mbmg...

#citizenscience #hymenoptera

Metabarcoding and targeted barcoding can enhance Norwegian Continental Shelf macrofauna species inventories Metabarcoding of bulk community samples is a powerful tool to characterize marine softbottom macrofaunal communities, but high-quality taxonomic assignment is dependent on adequate sequence coverage i...

Proud to have contributed to this study now published in PeerJ w Jon Hestetun, @mucofloris.bsky.social and others, where we show how accuracy of #metabarcoding can be improved by selecting and sequencing marker genes (barcdoding) of taxa missing from taxonomic databases.

peerj.com/articles/208...

🦉 New publication! 🦆
BirT: A Novel Primer Pair for Avian Environmental DNA Metabarcoding
onlinelibrary.wiley.com/doi/10.1002/...

Want to amplify birds from #eDNA samples? This new primer pair is the way to go!

@dirch3.bsky.social, Rachel Empey, Megan Cowperthwaite, Katerina Coveny #metabarcoding

Registrations are now closed for the #eDNA #metabarcoding workshop

Thanks everyone!

www.physalia-courses.org/courses-work...

#SoldOut

Ready to dive into #Metabarcoding and #MicrobialEcology?
Join us for a hands-on course — last seats available ⏳🧬

www.physalia-courses.org/courses-work...

The upcoming edition of the #eDNA #Metabarcoding course is almost full - only 2 seats left.

If interested: www.physalia-courses.org/courses-work...

Long-read sequencing can revolutionise the way we monitor #biodiversity.

A comprehensive guide for using #ONT & #PacBio for analysis of biodiversity through #eDNA, #metabarcoding, metagenomics

Just published in @methodsinecoevol.bsky.social
besjournals.onlinelibrary.wiley.com/doi/10.1111/...

💧 Can one water sample reveal marine life?

🐠 Yes! Using metabarcoding, our #BioProtect team at @matisiceland.bsky.social analyses unique "barcodes" in #eDNA to ID multiple species at once.

🔬 Swipe to explore the impact of #metabarcoding on #OceanBiodiversity!

#MissionOcean #EUMissions #HorizonEU

#OurFridaySeminar: Maëlle Pomiès on #Metabarcoding with long reads #sequencing data of pig fecal #microbiota
🐖 💩 🦠 🧬 📊

eDNA metabarcoding 23-27 February 2026 To foster international participation, this course will be held online

Interested in #eDNA #metabarcoding?

Have a look at our 2 upcoming courses

🧬 Illumina eDNA Metabarcoding (23–27 Feb) www.physalia-courses.org/courses-work...
🧪 Nanopore eDNA Metabarcoding (23–25 Mar) www.physalia-courses.org/courses-work...

Last seats available!

Hidden diversity of crust-like Sebacinaceae (Sebacinales, Agaricomycetes) in Asia Crust-like Sebacinaceae, comprising the genera Helvellosebacina, Sebacina, and Tremelloscypha, represent the only ectomycorrhizal lineage within the Sebacinaceae family. However, species delimitation ...

Hidden diversity of crust-like Sebacinaceae (Sebacinales, Agaricomycetes) in Asia

#Early-divergingspecies
#ectomycorrhiza
#Helvellosebacina
#metabarcoding
#newspecies
#phylogeny
#Sebacina
#Tremelloscypha

imafungus.pensoft.net/article/1684...

#JJC2026 Arnaud Boisdron (CRBE Toulouse) on characterization of #fungal communities associated with the king oyster #mushroom #Pleurotus eryngii in agropastoral dry grasslands, using environmental DNA #metabarcoding

eDNA metabarcoding 23-27 February 2026 To foster international participation, this course will be held online

🚨 Last seats for #eDNA #Metabarcoding online course!
🗓 23–27 Feb
👨‍💻 @leeselab.bsky.social @dominikbuchner.bsky.social @tillmacher.bsky.social
Don’t miss this opportunity to deepen your knowledge & connect with the international metabarcoding community!

www.physalia-courses.org/courses-work...

🧬A nearly 10-year study detects ~40% loss of #biodiversity in the #sea of Cabrera Archipelago and Atlantic Islands National Parks. It applies #metabarcoding as a tool for biodiversity monitoring 🔗www.ceab.csic.es/en/long-term-study-detec...

Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring DNA barcoding has become a cornerstone for species identification and biodiversity monitoring, enabling applications from ecological research to conservation and environmental policy. The Internationa...

Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring

@mbmg.pensoft.net

doi.org/10.3897/arph...

#DNA #metabarcoding #sciencepolicy #biodiversity