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Abstract:  Chromosome characterization is crucial in cytogenetic research and diagnostics, necessitating precise imaging methods to ensure proper analyses. The aim of this project is to identify a reliable method for chromosomal characterization that uses hyperspectral imagery of stained metaphase chromosomes using bright-field microscopy. We analyzed four hyperspectral images of stained chromosomes acquired under bright-field illumination. To address the high dimensionality of the hyperspectral hypercubes, we applied five dimension reduction algorithms based on spectral band selection to determine the most effective approach. A comparative study was conducted between five band selection methods to assess their effectiveness in chromosome characterization. The results indicate that sparse subspace clustering and multi-objective band selection are the most effective methods, outperforming the others in reducing the spectral dimensionality of the hyperspectral data, while preserving key properties essential for accurate chromosomes characterization. This study demonstrates that careful selection of spectral bands can enhance the analysis of spectral hypercubes for chromosome characterization.

Abstract: Chromosome characterization is crucial in cytogenetic research and diagnostics, necessitating precise imaging methods to ensure proper analyses. The aim of this project is to identify a reliable method for chromosomal characterization that uses hyperspectral imagery of stained metaphase chromosomes using bright-field microscopy. We analyzed four hyperspectral images of stained chromosomes acquired under bright-field illumination. To address the high dimensionality of the hyperspectral hypercubes, we applied five dimension reduction algorithms based on spectral band selection to determine the most effective approach. A comparative study was conducted between five band selection methods to assess their effectiveness in chromosome characterization. The results indicate that sparse subspace clustering and multi-objective band selection are the most effective methods, outperforming the others in reducing the spectral dimensionality of the hyperspectral data, while preserving key properties essential for accurate chromosomes characterization. This study demonstrates that careful selection of spectral bands can enhance the analysis of spectral hypercubes for chromosome characterization.

New from Applied Spectroscopy!
Exploring Band Selection Methods for Enhanced Chromosomal Analysis in Hyperspectral Imaging
Read more: https://doi.org/10.1177/00037028251403574
#SAS #Spectroscopy #Hyperspectral #Band #Selection #Chromosomal #Analysis

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Embryonic Selection by Polygenic Scores and Disability Explore how embryonic selection based on polygenic scores works, its connection to disability rights, and the scientific and ethical debate shaping its future.

Embryonic Selection by #PolygenicScores & #Disability - #EmbryonicSelection is the process by which one or more #embryos created through in #vitrofertilization are evaluated and chosen based on specific #genetic or #chromosomal criteria - www.disabled-world.com/disability/p...

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PGT-A as an IVF Add-On: 25 Years of Controversy This episode of the https://www.spreaker.com/show/progress-educational-trust-podcast discusses longstanding controversies surrounding PGT-A (preimplantation genetic testing for aneuploidy) – an 'add-on' to IVF treatment whose use has been the subject of lively debate for the past 25 years. The discussion – which originally took place at the PET Annual Conference – is introduced by Sarah Norcross (Director of PET) and chaired by Dr Deborah Cohen (science writer and broadcaster), with contributions from: ⚫ Professor Karen Sermon (former Chair of the European Society of Human Reproduction and Embryology) ⚫ Dr Justin Chu (Medical Director of TFP Oxford Fertility) ⚫ James Lawford Davies (Partner at LDMH Partners) ⚫ Professor Manuela Perrotta (Leader of the Remaking Fertility initiative) PET is grateful to Remaking Fertility – an initiative based at Queen Mary University of London – for supporting this discussion. PET is also grateful to Jon Nicoll, who created the opening and closing music for its podcast. Register at https://www.progress.org.uk/events/upcoming-events/ for upcoming PET events.

📣 New Podcast! "PGT-A as an IVF Add-On: 25 Years of Controversy" on @Spreaker #aneuploidy #bioethics #chromosomal #chromosome #dna #embryo #embryology #embryos #ethics #fertility #genetic #genetics #infertile #infertility #ivf #law #medicine #miscarriage #regulation #screening

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🧬New study characterizes and validates the widely used ribosomal DNA (18S) used in comparative #phylogenetics studies of order #Hymenoptera and provides new #chromosomal data of two previously unstudied leafcutter ant species.

➡️ doi.org/10.3897/comp...

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🔍 This new Aussie study examined how often a bird’s physical appearance doesn’t match its #geneticsex. Researchers determined #chromosomal sex using DNA tests in #wildbirdspecies and found sex-reversal rates between 0.5% and 6%.

 #wildlifescience

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Designing protein-based artificial kinetochores as decoys to prevent meiotic errors in oocytes - Nature Cell Biology Zhou et al. design protein-based artificial kinetochore constructs as decoys to prevent premature chromosomal separation in aged oocytes. These constructs compete with chromosomal kinetochores, reduci...

☕Zhou et al. design protein-based artificial #kinetochore constructs as decoys to prevent premature #chromosomal separation in aged #oocytes. These constructs compete with chromosomal kinetochores, reducing excessive bipolar #microtubule pulling forces.
bit.ly/48g0oTa

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what links folic acid and Fragile X syndrome?| Medical News Bulletin Folic acid deficiency is linked to Fragile X syndrome, now molecular biologists show how this essential nutrient prevents our DNA from breaking.

A blast from the past! Did you know that folic acid helps our DNA stay intact when cells multiply? Me neither! Prenatal Vitamin B9 AKA folate deficiency could up your kid’s chances of Fragile X syndrome.
medicalnewsbulletin.com/folate-defic... 🧬 #pregnancydiet #chromosomal #fetalhealth 🧪

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School of Biological Sciences, University of Edinburgh. Pic by Katja Noskova

School of Biological Sciences, University of Edinburgh. Pic by Katja Noskova

A dream came true as I started recently a postdoc in Edinburgh, @ simonmartinlab.org! I study the role of #chromosomal #inversions in #adaptation - especially in changing environments; involving #popgen, African monarch #butterfly #pangenomics & #SLiM. Big thank you #skr for making this possible.

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Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Waterhemp has recently evolved separate M & F sexes from a monoecious ancestor. @jmkreiner.bsky.social @stepheniwright.bsky.social &co reveal surprising #chromosomal complexity associated with this transition, challenging assumptions of how separate #sexes evolve @plosbiology.org 🧪 plos.io/46sTg6u

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Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Waterhemp has recently evolved separate M & F sexes from a monoecious ancestor. @jmkreiner.bsky.social @stepheniwright.bsky.social &co reveal surprising #chromosomal complexity associated with this transition, challenging assumptions of how separate #sexes evolve @plosbiology.org 🧪 plos.io/46sTg6u

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Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Male waterhemp (Amaranthus tuberculatus) displaying the compact, dense inflorescence structure characteristic of staminate plants. The reddish-purple flower spikes contain numerous small flowers, each bearing the yellow anthers that produce pollen in this dioecious species. Image credit: Julia Kreiner.

Waterhemp has recently evolved separate M & F sexes from a monoecious ancestor. @jmkreiner.bsky.social @stepheniwright.bsky.social &co reveal surprising #chromosomal complexity associated with this transition, challenging assumptions of how separate #sexes evolve @plosbiology.org 🧪 plos.io/46sTg6u

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🌿 Unlocking #peanut genetics with new oligo probe libraries! LS-7A and LS-8A are proving invaluable for detecting #chromosomal rearrangements, translocations, and inversions. A breakthrough for #PeanutBreeding and genomics! 🧬 #GeneticMapping #Arachis

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Roles of chromosomal and gonadal sex in the fetal and placental responses to maternal food restriction in mice Abstract. It is hypothesized that male fetuses are more vulnerable to in utero insults than females due to different growth strategies, and that the placen

In this study, the authors explored #sexdifferences in the fetal and placental responses to #maternal food restriction beginning mid-gestation, and investigated the roles of #chromosomal and #gonadal sex.
Dive into the full story! 🔗📚👇
academic.oup.com/molehr/artic...

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👋🏿Happy new year and our first 2025 issue's out!
Cover: #chromosomal instability in #cancer

👉Review on #TranscriptionFactors and #cell quiescence
🔬#heterochromatin #embryo #DNArepair #pluripotency #proteostasis #obesity #CellCycle #CellDeath & more!

www.nature.com/ncb/volumes/...

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