Figure 1 Medrano et al (2026): Box-plots showing variation in average genome-wide DNA cytosine methylation (%) between ramets from the three study populations assigned to each of the three levels of herbivory treatment (control, insect and artificial herbivory). Each dot represents a ramet (N = 18, 27, and 18 for Spain, Italy and Poland, respectively). Lower and upper box boundaries are the 25th and 75th percentiles, respectively, line inside box the median, lower and upper error lines the 10th and 90th percentiles. Differences between the two herbivory levels and control undamaged plants were only statistically significant in CHH context

New publication: #Epigenomic response to #insect #herbivory in Lombardy #poplar: assessing geographic variation in #DNA #methylation changes, by @kjfverhoeven.bsky.social and others.
doi.org/10.1007/s112...

New atlas shows how adult brain cells retain traces of their development A new study from Karolinska Institutet and SciLifeLab presents a detailed map of how gene activity is regulated in individual cells of the adult human brain and spinal cord. Published in Nature Neuros...

New atlas shows how adult brain cells retain traces of their development. 🧪

“For this #SingleCell #epigenomic mapping of the human brain, extensive #DNAsequencing was required,” says @gocastelobranco.bsky.social

More here ↓
www.scilifelab.se/news/new-atl...

Can an #AI-trained program predict specific #genomic and #epigenomic patterns in #meningiomas, and can it extract more prognostic information out of standard hematoxylin and eosin histopathology than the current WHO classification?

Read the full article: bit.ly/3N7Tjxx

Organism-wide cellular dynamics and epigenomic remodeling in mammalian aging To investigate organism-wide cellular alterations and epigenomic dynamics during aging, we constructed a single-cell chromatin accessibility atlas spanning 21 mouse tissues across three age groups and...

Organism-wide #cellular dynamics and #epigenomic remodeling in mammalian #aging | Science www.science.org/doi/10.1126/...

This study provides the first comprehensive #Genomic & #Epigenomic characterization of #ICESyndrome, revealing RP1L1 mutations, copy number losses, & widespread hypomethylation as its key drivers.

#OpenAccess: doi.org/10.1016/j.ge...

This study introduces an XGBoost-based predictor for CTCF-mediated chromatin loops using #genomic and #epigenomic features, achieving F-scores above 0.9 across GM12878 and K562 cell lines.

Introduction to Epigenomics | Online Seminar | Statistical Horizons This online workshop taught by Jennifer Smith, Ph.D., provides a conceptual understanding of epigenomics, particularly methylomics.

What is the epigenome, and why does it matter? Find out in Jennifer Smith’s "Introduction to Epigenomics," Nov. 5-7. You'll learn to manage, clean, & model #epigenomic data, understand DNA methylation, and create & use biomarkers to enhance your health & environmental research.

Genome-wide profiling of unmodified DNA using methyltransferase-directed tagging and enrichment Tosti et al. report a method for genome-wide, epigenomic profiling that enriches DNA containing unmodified CpG sites for analysis. The enzymatic approach does not damage DNA, nor does it rely on base ...

Another method joins the ranks for the #epigenomic profiling of low-input DNA samples: Active-Seq www.cell.com/cell-reports...

The epigenomic landscape of bronchial epithelial cells reveals the establishment of trained immunity - Genes & Immunity Genes & Immunity - The epigenomic landscape of bronchial epithelial cells reveals the establishment of trained immunity

The #epigenomic #landscape of #bronchial #epithelial cells reveals the establishment of #trained #immunity

#Genes & #Immunity @springernature.com
www.nature.com/articles/s41...

TOMORROW!🚀Webinar
Join us to explore CUT&RUN a revolutionary #epigenomic mapping tool quickly replacing ChIP-Seq with @epicypher.bsky.social 

💡Advancing Epigenomics with CUT&RUN: Tips, Tricks & Best Practices
🗓️Thursday 25th September
⏰2:00-3:00pm GMT
🔗 https://tinyurl.com/3uw4yhdh
#genomics

schematic of genetic tagging of cells that respond preferentially to early-life stress, and then capturing ribosomally tethered transcripts in these same cells

Just dropped! 🧠🧪how to pinpoint brain cells activated by early-life #stress then determine their #epigenomic and #transcriptional changes that govern adult behaviors. Led by @amaliaflorious.bsky.social @svmahler.bsky.social @cate-cholamine.bsky.social @thebalelab.bsky.social doi.org/10.3389/fnin...

🚀Webinar
Join us to explore CUT&RUN a revolutionary #epigenomic mapping tool quickly replacing ChIP-Seq
with @epicypher.bsky.social setting you on the path to success

💡Advancing Epigenomics with CUT&RUN: Tips, Tricks & Best Practices
🗓️Thursday 25th September
⏰2:00-3:00pm GMT
🔗 tinyurl.com/3uw4yhdh

M6Allele: a toolkit for detection of allele-specific RNA N6-methyladenosine modifications AbstractBackground. Allelic gene-specific regulatory events are crucial mechanisms in organisms, pivotal to many fundamental biological processes such as e

A new #epigenomic method developed for detecting ASm6A events using MeRIP-seq data

M6Allele: a toolkit for detection of allele-specific RNA N6-methyladenosine modifications doi.org/10.1093/giga...

Identification of ZNF384 as a regulator of epigenome in leukemia Leukemia is a complex hematologic cancer driven by genetic and epigenetic changes that impact gene expression. Understanding these molecular mechanism…

I would like to share with you my new paper collaboration "Identification of ZNF384 as a regulator of epigenome in leukemia"

www.sciencedirect.com/science/arti...

#leukemia #research #ZNF384 #epigenomic #leucemia

📢 We will be at the @theaacr.bsky.social Annual Meeting '25, 25-30/04, Chicago.

Discover how our Virtuoso Epigenomics Platform is empowering more efficient oncology #drugdiscovery & development by leveraging 5hmC #epigenomic profiling to uncover active cancer biology patterns from #cfDNA in plasma.

Online now in Stem Cell Reports! FOXO4-SP6 axis controls surface epithelium fate determination by regulating #epigenomic remodeling. #superenhancer #KRT8reporter ow.ly/UZvH50VinfJ

@isscr.org @cellpress.bsky.social @gairdnerawards.bsky.social @sickkidsvs.bsky.social

Introduction to Epigenomics Seminar | Statistics Course This online seminar by Jennifer Smith will equip you with the technical skills to conduct a range of popular statistical epigenomic analyses.

What is the epigenome, and why does it matter? Find out in Jennifer Smith’s "Introduction to Epigenomics," Jan. 23-25. You'll learn to manage, clean, & model #epigenomic data, understand DNA methylation, and create & use biomarkers to enhance your health & environmental research.

Epigenomics of Common Diseases (hybrid conference) Dates: 12-14 March 2025 Location: Hinxton Hall Conference Centre, Wellcome Genome Campus, UK and online Bursary deadline: 10 December 2024 Abstract deadline: 14 January 2025 In-person registration deadline: 11 February 2025 Virtual registration deadline: 4 March 2025

Share your #epigenetics research at #Epigenomics25!

⏰Submit an abstract by 14 January

Participate in a global showcase of #epigenomic approaches for the study of common #HumanDiseases.

Present to global experts including @jordanatbell.bsky.social

Info➡️bit.ly/41tL5Vj

#PhDchat #AcademicChatter

EGDB: A comprehensive multi‐omics database for energy grasses and the epigenomic atlas of pearl millet Given the key role of energy grasses in biomass energy, electricity, biofuels, and carbon sequestration, the Energy Grass Omics Database (EGDB) integrates germplasm data with genomics, transcriptomic...

EGDB: A comprehensive multi‐omics #database for energy grasses and the #epigenomic atlas of pearl millet onlinelibrary.wiley.com/doi/full/10....
#Bioinformatics

SARS-CoV-2 mitochondrial metabolic and epigenomic reprogramming in COVID-19 To determine the effects of SARS-CoV-2 infection on cellular metabolism, we conducted an exhaustive survey of the cellular metabolic pathways modulate…

Recap : #SARSCoV2 #mitochondrialmetabolic and #epigenomic reprogramming in #COVID19 / #LongCovid

www.sciencedirect.com/science/arti...

Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells - Nature Communications In this work, the authors apply polymer models to reconstruct the 3D structure of the genome during SARS-CoV-2 infection and examine how the virus impacts key mechanisms of chromatin organization.

#MedSky 🧪 #IDSky #Immunology The chilling effects of being infected by #SARSCoV2 .🦠can re-structure chromatin organization www.nature.com/articles/s12... & alter the #epigenomic landscape of the host #genome
www.nature.com/articles/s41...

Mapping the epigenomic and transcriptomic interplay durin... The authors show that a coordinated epigenetic priming ev...

Ever wonder how memories are made? "Mapping the #epigenomic and transcriptomic interplay during memory formation and recall in the #hippocampal engram ensemble" https://www.nature.com/articles/s41593-020-00717-0